Cluster: Rep_453_CGC24
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate: fructan
- Genome ID: Rep_453
- CGC Family ID: CGCFAM_00017
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_453_c_132 | Rep_453_c_132_4 | 5684 | 6382 | + | 1.B.14.6.1 |
| TC | Rep_453_c_132 | Rep_453_c_132_5 | 6415 | 8790 | + | 1.B.14.6.1 |
| pfam | Rep_453_c_132 | Rep_453_c_132_6 | 8810 | 10543 | + | SusD_RagB | SusD-like_3 |
| pfam | Rep_453_c_132 | Rep_453_c_132_7 | 10571 | 11974 | + | DUF4960 |
| CAZyme | Rep_453_c_132 | Rep_453_c_132_8 | 11986 | 13575 | + | GH32 |
| CAZyme | Rep_453_c_132 | Rep_453_c_132_9 | 13694 | 15619 | + | CBM38 | GH32 |
| TF | Rep_453_c_132 | Rep_453_c_132_10 | 15926 | 17356 | - | 0040266 |
| NULL(UNKNOWN) | Rep_453_c_132 | Rep_453_c_132_11 | 17491 | 17688 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_453_c_132 | Rep_453_c_132_12 | 17859 | 20972 | + | 1.B.14.6.1 |
| pfam | Rep_453_c_132 | Rep_453_c_132_13 | 20991 | 22727 | + | SusD_RagB | SusD-like_3 |
| CAZyme | Rep_453_c_132 | Rep_453_c_132_14 | 22806 | 24623 | + | GH32 |
| TC | Rep_453_c_132 | Rep_453_c_132_15 | 24635 | 25798 | + | 2.A.1.7.17 |
Gene ID: Rep_453_c_132_4
Type: TC
Location: 5684 - 6382 (+)
Type: TC
Location: 5684 - 6382 (+)
Gene ID: Rep_453_c_132_5
Type: TC
Location: 6415 - 8790 (+)
Type: TC
Location: 6415 - 8790 (+)
Gene ID: Rep_453_c_132_6
Type: pfam
Location: 8810 - 10543 (+)
Type: pfam
Location: 8810 - 10543 (+)
Gene ID: Rep_453_c_132_7
Type: pfam
Location: 10571 - 11974 (+)
Type: pfam
Location: 10571 - 11974 (+)
Gene ID: Rep_453_c_132_8
Type: CAZyme
Location: 11986 - 13575 (+)
Type: CAZyme
Location: 11986 - 13575 (+)
Gene ID: Rep_453_c_132_9
Type: CAZyme
Location: 13694 - 15619 (+)
Type: CAZyme
Location: 13694 - 15619 (+)
Gene ID: Rep_453_c_132_10
Type: TF
Location: 15926 - 17356 (-)
Type: TF
Location: 15926 - 17356 (-)
Gene ID: Rep_453_c_132_11
Type:
Location: 17491 - 17688 (-)
Type:
Location: 17491 - 17688 (-)
Gene ID: Rep_453_c_132_12
Type: TC
Location: 17859 - 20972 (+)
Type: TC
Location: 17859 - 20972 (+)
Gene ID: Rep_453_c_132_13
Type: pfam
Location: 20991 - 22727 (+)
Type: pfam
Location: 20991 - 22727 (+)
Gene ID: Rep_453_c_132_14
Type: CAZyme
Location: 22806 - 24623 (+)
Type: CAZyme
Location: 22806 - 24623 (+)
Gene ID: Rep_453_c_132_15
Type: TC
Location: 24635 - 25798 (+)
Type: TC
Location: 24635 - 25798 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_453_c_132_13 | vegan > omnivore | 1.19002 | 0.04329 |
| Rep_453_c_132_13 | vegetarian > omnivore | 1.91562 | 0.03459 |
| Rep_453_c_132_15 | vegetarian > omnivore | 1.45215 | 0.03459 |