Cluster: Rep_453_CGC2
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 4
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: Rep_453
- CGC Family ID: CGCFAM_00001
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_453_c_5 | Rep_453_c_5_23 | 23703 | 25220 | + | GH111 |
| TC | Rep_453_c_5 | Rep_453_c_5_24 | 25253 | 28288 | + | 1.B.14.6.1 |
| pfam | Rep_453_c_5 | Rep_453_c_5_25 | 28299 | 29933 | + | SusD_RagB | SusD-like_3 |
| CAZyme | Rep_453_c_5 | Rep_453_c_5_26 | 30002 | 31885 | + | GH163 |
| CAZyme | Rep_453_c_5 | Rep_453_c_5_27 | 31947 | 34013 | + | CBM32 | GH29 |
| CAZyme | Rep_453_c_5 | Rep_453_c_5_28 | 34044 | 35513 | + | GH29 |
Gene ID: Rep_453_c_5_23
Type: CAZyme
Location: 23703 - 25220 (+)
Type: CAZyme
Location: 23703 - 25220 (+)
Gene ID: Rep_453_c_5_24
Type: TC
Location: 25253 - 28288 (+)
Type: TC
Location: 25253 - 28288 (+)
Gene ID: Rep_453_c_5_25
Type: pfam
Location: 28299 - 29933 (+)
Type: pfam
Location: 28299 - 29933 (+)
Gene ID: Rep_453_c_5_26
Type: CAZyme
Location: 30002 - 31885 (+)
Type: CAZyme
Location: 30002 - 31885 (+)
Gene ID: Rep_453_c_5_27
Type: CAZyme
Location: 31947 - 34013 (+)
Type: CAZyme
Location: 31947 - 34013 (+)
Gene ID: Rep_453_c_5_28
Type: CAZyme
Location: 34044 - 35513 (+)
Type: CAZyme
Location: 34044 - 35513 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.