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Cluster: Rep_453_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_453_c_61 Rep_453_c_61_7 7557 11117 + 1.B.14.6.1
pfam Rep_453_c_61 Rep_453_c_61_8 11140 13251 + SusD_RagB | SusD-like_3
NULL(UNKNOWN) Rep_453_c_61 Rep_453_c_61_9 13226 14644 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_453_c_61 Rep_453_c_61_10 14903 17944 + GH2
CAZyme Rep_453_c_61 Rep_453_c_61_11 17946 21344 + GH2
pfam Rep_453_c_61 Rep_453_c_61_12 21478 21969 - Cupin_2
CAZyme Rep_453_c_61 Rep_453_c_61_13 22159 23769 + PL10_2
CAZyme Rep_453_c_61 Rep_453_c_61_14 23881 25041 + CE19
CAZyme Rep_453_c_61 Rep_453_c_61_15 25049 26773 + CE12 | CE8
Gene ID: Rep_453_c_61_7
Type: TC
Location: 7557 - 11117 (+)
Gene ID: Rep_453_c_61_8
Type: pfam
Location: 11140 - 13251 (+)
Gene ID: Rep_453_c_61_9
Type:
Location: 13226 - 14644 (+)
Gene ID: Rep_453_c_61_10
Type: CAZyme
Location: 14903 - 17944 (+)
Gene ID: Rep_453_c_61_11
Type: CAZyme
Location: 17946 - 21344 (+)
Gene ID: Rep_453_c_61_12
Type: pfam
Location: 21478 - 21969 (-)
Gene ID: Rep_453_c_61_13
Type: CAZyme
Location: 22159 - 23769 (+)
Gene ID: Rep_453_c_61_14
Type: CAZyme
Location: 23881 - 25041 (+)
Gene ID: Rep_453_c_61_15
Type: CAZyme
Location: 25049 - 26773 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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