Cluster: Rep_453_CGC11
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 4
- Substrate: pectin
- Genome ID: Rep_453
- CGC Family ID: CGCFAM_00136
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_453_c_56 | Rep_453_c_56_1 | 483 | 3779 | + | 1.B.14.6.1 |
| pfam | Rep_453_c_56 | Rep_453_c_56_2 | 3799 | 5838 | + | SusD_RagB | SusD-like_3 |
| TC | Rep_453_c_56 | Rep_453_c_56_3 | 5925 | 7634 | - | 8.A.46.1.6 |
| TC | Rep_453_c_56 | Rep_453_c_56_4 | 7669 | 10785 | - | 1.B.14.6.1 |
| CAZyme | Rep_453_c_56 | Rep_453_c_56_5 | 10848 | 12179 | - | CE8 |
| CAZyme | Rep_453_c_56 | Rep_453_c_56_6 | 12293 | 13804 | - | CE12 |
| pfam | Rep_453_c_56 | Rep_453_c_56_7 | 14037 | 15671 | - | DUF5123 |
| sulfatase | Rep_453_c_56 | Rep_453_c_56_8 | 15699 | 17774 | - | S1_27 |
| TC | Rep_453_c_56 | Rep_453_c_56_9 | 17787 | 21032 | - | 1.B.14.6.1 |
| CAZyme | Rep_453_c_56 | Rep_453_c_56_10 | 21189 | 22706 | - | CE12 |
| CAZyme | Rep_453_c_56 | Rep_453_c_56_11 | 22721 | 25192 | - | GH95 |
Gene ID: Rep_453_c_56_1
Type: TC
Location: 483 - 3779 (+)
Type: TC
Location: 483 - 3779 (+)
Gene ID: Rep_453_c_56_2
Type: pfam
Location: 3799 - 5838 (+)
Type: pfam
Location: 3799 - 5838 (+)
Gene ID: Rep_453_c_56_3
Type: TC
Location: 5925 - 7634 (-)
Type: TC
Location: 5925 - 7634 (-)
Gene ID: Rep_453_c_56_4
Type: TC
Location: 7669 - 10785 (-)
Type: TC
Location: 7669 - 10785 (-)
Gene ID: Rep_453_c_56_5
Type: CAZyme
Location: 10848 - 12179 (-)
Type: CAZyme
Location: 10848 - 12179 (-)
Gene ID: Rep_453_c_56_6
Type: CAZyme
Location: 12293 - 13804 (-)
Type: CAZyme
Location: 12293 - 13804 (-)
Gene ID: Rep_453_c_56_7
Type: pfam
Location: 14037 - 15671 (-)
Type: pfam
Location: 14037 - 15671 (-)
Gene ID: Rep_453_c_56_8
Type: sulfatase
Location: 15699 - 17774 (-)
Type: sulfatase
Location: 15699 - 17774 (-)
Gene ID: Rep_453_c_56_9
Type: TC
Location: 17787 - 21032 (-)
Type: TC
Location: 17787 - 21032 (-)
Gene ID: Rep_453_c_56_10
Type: CAZyme
Location: 21189 - 22706 (-)
Type: CAZyme
Location: 21189 - 22706 (-)
Gene ID: Rep_453_c_56_11
Type: CAZyme
Location: 22721 - 25192 (-)
Type: CAZyme
Location: 22721 - 25192 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.