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Cluster: Rep_447_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_447_c_3 Rep_447_c_3_22 26915 28333 + 9.A.25.1.1
pfam Rep_447_c_3 Rep_447_c_3_23 28344 29132 + GldL_N
TC Rep_447_c_3 Rep_447_c_3_24 29172 30734 + 9.A.25.1.1
pfam Rep_447_c_3 Rep_447_c_3_25 30767 31846 + GldN
pfam Rep_447_c_3 Rep_447_c_3_26 31982 32608 + OMP_b-brl | OMP_b-brl_2
TC Rep_447_c_3 Rep_447_c_3_27 32712 35192 + 3.A.11.3.1
STP Rep_447_c_3 Rep_447_c_3_28 35211 37271 - HD
pfam Rep_447_c_3 Rep_447_c_3_29 37377 38894 + tRNA-synt_1c | Anticodon_2
CAZyme Rep_447_c_3 Rep_447_c_3_30 38894 40120 + GT30
Gene ID: Rep_447_c_3_22
Type: TC
Location: 26915 - 28333 (+)
Gene ID: Rep_447_c_3_23
Type: pfam
Location: 28344 - 29132 (+)
Gene ID: Rep_447_c_3_24
Type: TC
Location: 29172 - 30734 (+)
Gene ID: Rep_447_c_3_25
Type: pfam
Location: 30767 - 31846 (+)
Gene ID: Rep_447_c_3_26
Type: pfam
Location: 31982 - 32608 (+)
Gene ID: Rep_447_c_3_27
Type: TC
Location: 32712 - 35192 (+)
Gene ID: Rep_447_c_3_28
Type: STP
Location: 35211 - 37271 (-)
Gene ID: Rep_447_c_3_29
Type: pfam
Location: 37377 - 38894 (+)
Gene ID: Rep_447_c_3_30
Type: CAZyme
Location: 38894 - 40120 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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