Cluster: Rep_447_CGC30
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_447
- CGC Family ID: CGCFAM_00028
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_447_c_54 | Rep_447_c_54_11 | 10904 | 12868 | + | GH133 |
| CAZyme | Rep_447_c_54 | Rep_447_c_54_12 | 12865 | 14145 | + | GT4 |
| CAZyme | Rep_447_c_54 | Rep_447_c_54_13 | 14164 | 15567 | + | GH57 |
| pfam | Rep_447_c_54 | Rep_447_c_54_14 | 15745 | 16623 | - | THF_DHG_CYH | THF_DHG_CYH_C |
| TC | Rep_447_c_54 | Rep_447_c_54_15 | 16653 | 17999 | - | 3.A.5.1.1 |
| NULL(UNKNOWN) | Rep_447_c_54 | Rep_447_c_54_16 | 18233 | 19789 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_447_c_54 | Rep_447_c_54_17 | 20017 | 21627 | + | 3.A.1.121.4 |
Gene ID: Rep_447_c_54_11
Type: CAZyme
Location: 10904 - 12868 (+)
Type: CAZyme
Location: 10904 - 12868 (+)
Gene ID: Rep_447_c_54_12
Type: CAZyme
Location: 12865 - 14145 (+)
Type: CAZyme
Location: 12865 - 14145 (+)
Gene ID: Rep_447_c_54_13
Type: CAZyme
Location: 14164 - 15567 (+)
Type: CAZyme
Location: 14164 - 15567 (+)
Gene ID: Rep_447_c_54_14
Type: pfam
Location: 15745 - 16623 (-)
Type: pfam
Location: 15745 - 16623 (-)
Gene ID: Rep_447_c_54_15
Type: TC
Location: 16653 - 17999 (-)
Type: TC
Location: 16653 - 17999 (-)
Gene ID: Rep_447_c_54_16
Type:
Location: 18233 - 19789 (+)
Type:
Location: 18233 - 19789 (+)
Gene ID: Rep_447_c_54_17
Type: TC
Location: 20017 - 21627 (+)
Type: TC
Location: 20017 - 21627 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Paraprevotella
Species
Paraprevotella sp900760455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.