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Cluster: Rep_439_CGC48

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_439_c_4 Rep_439_c_4_1292 1598003 1599397 - 2.A.6.2.20
TC Rep_439_c_4 Rep_439_c_4_1293 1599394 1602507 - 2.A.6.2.25
TC Rep_439_c_4 Rep_439_c_4_1294 1602533 1603750 - 2.A.6.2.4
NULL(UNKNOWN) Rep_439_c_4 Rep_439_c_4_1295 1604141 1604233 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_439_c_4 Rep_439_c_4_1296 1604369 1604653 + Lys_export
TC Rep_439_c_4 Rep_439_c_4_1297 1604643 1605269 + 2.A.124.1.4
pfam Rep_439_c_4 Rep_439_c_4_1298 1605400 1607853 + RicinB_lectin_2
NULL(UNKNOWN) Rep_439_c_4 Rep_439_c_4_1299 1607894 1608052 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_439_c_4 Rep_439_c_4_1300 1608229 1612689 + GH33
Gene ID: Rep_439_c_4_1292
Type: TC
Location: 1598003 - 1599397 (-)
Gene ID: Rep_439_c_4_1293
Type: TC
Location: 1599394 - 1602507 (-)
Gene ID: Rep_439_c_4_1294
Type: TC
Location: 1602533 - 1603750 (-)
Gene ID: Rep_439_c_4_1295
Type:
Location: 1604141 - 1604233 (-)
Gene ID: Rep_439_c_4_1296
Type: pfam
Location: 1604369 - 1604653 (+)
Gene ID: Rep_439_c_4_1297
Type: TC
Location: 1604643 - 1605269 (+)
Gene ID: Rep_439_c_4_1298
Type: pfam
Location: 1605400 - 1607853 (+)
Gene ID: Rep_439_c_4_1299
Type:
Location: 1607894 - 1608052 (+)
Gene ID: Rep_439_c_4_1300
Type: CAZyme
Location: 1608229 - 1612689 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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