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Cluster: Rep_439_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_439_c_3 Rep_439_c_3_127 149468 150856 + 2.A.22.5.3
TC Rep_439_c_3 Rep_439_c_3_128 150988 152646 - 2.A.3.3.22
NULL(UNKNOWN) Rep_439_c_3 Rep_439_c_3_129 152730 153416 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_439_c_3 Rep_439_c_3_130 153874 154422 + DUF4199
CAZyme Rep_439_c_3 Rep_439_c_3_131 154443 155399 + GT2
pfam Rep_439_c_3 Rep_439_c_3_132 155401 155898 + DUF6452
pfam Rep_439_c_3 Rep_439_c_3_133 155855 156562 + DUF6048
TC Rep_439_c_3 Rep_439_c_3_134 156582 157169 + 2.A.107.1.2
Gene ID: Rep_439_c_3_127
Type: TC
Location: 149468 - 150856 (+)
Gene ID: Rep_439_c_3_128
Type: TC
Location: 150988 - 152646 (-)
Gene ID: Rep_439_c_3_129
Type:
Location: 152730 - 153416 (-)
Gene ID: Rep_439_c_3_130
Type: pfam
Location: 153874 - 154422 (+)
Gene ID: Rep_439_c_3_131
Type: CAZyme
Location: 154443 - 155399 (+)
Gene ID: Rep_439_c_3_132
Type: pfam
Location: 155401 - 155898 (+)
Gene ID: Rep_439_c_3_133
Type: pfam
Location: 155855 - 156562 (+)
Gene ID: Rep_439_c_3_134
Type: TC
Location: 156582 - 157169 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_439_c_3_131 vegetarian > vegan 1.60343 0.02258

🧭 Explore Read Mapping of CGC

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