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Cluster: Rep_439_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_439_c_4 Rep_439_c_4_409 506723 509089 - GH20
pfam Rep_439_c_4 Rep_439_c_4_410 509238 510050 + Inositol_P
CAZyme Rep_439_c_4 Rep_439_c_4_411 510141 512390 - CE1
pfam Rep_439_c_4 Rep_439_c_4_412 512597 513109 + Flavodoxin_1
CAZyme Rep_439_c_4 Rep_439_c_4_413 513283 514254 - GT2
CAZyme Rep_439_c_4 Rep_439_c_4_414 514251 515195 - GT2
peptidase Rep_439_c_4 Rep_439_c_4_415 515270 517528 - I39.UPW
TC Rep_439_c_4 Rep_439_c_4_416 517936 520392 - 3.A.3.5.1
TF Rep_439_c_4 Rep_439_c_4_417 520468 521040 - HTH_AraC
TC Rep_439_c_4 Rep_439_c_4_418 521153 523087 + 3.A.3.6.10
CAZyme Rep_439_c_4 Rep_439_c_4_419 523293 525992 - GH2
Gene ID: Rep_439_c_4_409
Type: CAZyme
Location: 506723 - 509089 (-)
Gene ID: Rep_439_c_4_410
Type: pfam
Location: 509238 - 510050 (+)
Gene ID: Rep_439_c_4_411
Type: CAZyme
Location: 510141 - 512390 (-)
Gene ID: Rep_439_c_4_412
Type: pfam
Location: 512597 - 513109 (+)
Gene ID: Rep_439_c_4_413
Type: CAZyme
Location: 513283 - 514254 (-)
Gene ID: Rep_439_c_4_414
Type: CAZyme
Location: 514251 - 515195 (-)
Gene ID: Rep_439_c_4_415
Type: peptidase
Location: 515270 - 517528 (-)
Gene ID: Rep_439_c_4_416
Type: TC
Location: 517936 - 520392 (-)
Gene ID: Rep_439_c_4_417
Type: TF
Location: 520468 - 521040 (-)
Gene ID: Rep_439_c_4_418
Type: TC
Location: 521153 - 523087 (+)
Gene ID: Rep_439_c_4_419
Type: CAZyme
Location: 523293 - 525992 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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