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Cluster: Rep_439_CGC26

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_439_c_4 Rep_439_c_4_336 416491 418779 - GH95
CAZyme Rep_439_c_4 Rep_439_c_4_337 418812 420404 - CBM91 | GH43_10
CAZyme Rep_439_c_4 Rep_439_c_4_338 420418 423375 - GH2
CAZyme Rep_439_c_4 Rep_439_c_4_339 423344 426187 - GH35
CAZyme Rep_439_c_4 Rep_439_c_4_340 426222 428507 - GH92
TF Rep_439_c_4 Rep_439_c_4_341 428605 429180 - Crp
TC Rep_439_c_4 Rep_439_c_4_342 429267 430373 - 3.A.1.105.4
TC Rep_439_c_4 Rep_439_c_4_343 430388 431500 - 3.A.1.105.4
TC Rep_439_c_4 Rep_439_c_4_344 431543 432286 - 3.A.1.105.4
TC Rep_439_c_4 Rep_439_c_4_345 432273 433199 - 3.A.1.105.15
TC Rep_439_c_4 Rep_439_c_4_346 433209 434111 - 3.A.1.105.16
Gene ID: Rep_439_c_4_336
Type: CAZyme
Location: 416491 - 418779 (-)
Gene ID: Rep_439_c_4_337
Type: CAZyme
Location: 418812 - 420404 (-)
Gene ID: Rep_439_c_4_338
Type: CAZyme
Location: 420418 - 423375 (-)
Gene ID: Rep_439_c_4_339
Type: CAZyme
Location: 423344 - 426187 (-)
Gene ID: Rep_439_c_4_340
Type: CAZyme
Location: 426222 - 428507 (-)
Gene ID: Rep_439_c_4_341
Type: TF
Location: 428605 - 429180 (-)
Gene ID: Rep_439_c_4_342
Type: TC
Location: 429267 - 430373 (-)
Gene ID: Rep_439_c_4_343
Type: TC
Location: 430388 - 431500 (-)
Gene ID: Rep_439_c_4_344
Type: TC
Location: 431543 - 432286 (-)
Gene ID: Rep_439_c_4_345
Type: TC
Location: 432273 - 433199 (-)
Gene ID: Rep_439_c_4_346
Type: TC
Location: 433209 - 434111 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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