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Cluster: Rep_439_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_439_c_4 Rep_439_c_4_300 366864 367925 - 3.A.2.1.7
NULL(UNKNOWN) Rep_439_c_4 Rep_439_c_4_301 367922 368335 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_439_c_4 Rep_439_c_4_302 368349 368618 - 3.A.2.1.6
TC Rep_439_c_4 Rep_439_c_4_303 368626 370149 - 3.A.2.1.2
TF Rep_439_c_4 Rep_439_c_4_304 370346 371296 + HTH_1
TC Rep_439_c_4 Rep_439_c_4_305 371505 373085 - 1.B.9.4.2
NULL(UNKNOWN) Rep_439_c_4 Rep_439_c_4_306 373120 374139 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_439_c_4 Rep_439_c_4_307 374289 375137 + MTS | PrmA | Methyltransf_11 | Methyltransf_16 | Methyltransf_25 | Methyltransf_31
TC Rep_439_c_4 Rep_439_c_4_308 375338 376687 - 1.B.9.2.4
CAZyme Rep_439_c_4 Rep_439_c_4_309 376865 377764 - GH25
Gene ID: Rep_439_c_4_300
Type: TC
Location: 366864 - 367925 (-)
Gene ID: Rep_439_c_4_301
Type:
Location: 367922 - 368335 (-)
Gene ID: Rep_439_c_4_302
Type: TC
Location: 368349 - 368618 (-)
Gene ID: Rep_439_c_4_303
Type: TC
Location: 368626 - 370149 (-)
Gene ID: Rep_439_c_4_304
Type: TF
Location: 370346 - 371296 (+)
Gene ID: Rep_439_c_4_305
Type: TC
Location: 371505 - 373085 (-)
Gene ID: Rep_439_c_4_306
Type:
Location: 373120 - 374139 (-)
Gene ID: Rep_439_c_4_307
Type: pfam
Location: 374289 - 375137 (+)
Gene ID: Rep_439_c_4_308
Type: TC
Location: 375338 - 376687 (-)
Gene ID: Rep_439_c_4_309
Type: CAZyme
Location: 376865 - 377764 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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