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Cluster: Rep_439_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_439_c_4 Rep_439_c_4_25 25605 27959 + GH141
pfam Rep_439_c_4 Rep_439_c_4_26 28068 29231 - PepSY_TM
pfam Rep_439_c_4 Rep_439_c_4_27 29376 30803 - DUF4374
TC Rep_439_c_4 Rep_439_c_4_28 30849 33227 - 1.B.14.3.6
TF Rep_439_c_4 Rep_439_c_4_29 33579 34370 - LytTR
TC Rep_439_c_4 Rep_439_c_4_30 34382 35434 - 8.A.59.2.1
pfam Rep_439_c_4 Rep_439_c_4_31 35443 36744 - OEP | OEP
TC Rep_439_c_4 Rep_439_c_4_32 36780 39824 - 2.A.6.2.37
pfam Rep_439_c_4 Rep_439_c_4_33 39834 40862 - Biotin_lipoyl_2 | HlyD_D23
TC Rep_439_c_4 Rep_439_c_4_34 41257 41877 + 3.A.1.15.8
TC Rep_439_c_4 Rep_439_c_4_35 41881 42699 + 3.A.1.139.3
Gene ID: Rep_439_c_4_25
Type: CAZyme
Location: 25605 - 27959 (+)
Gene ID: Rep_439_c_4_26
Type: pfam
Location: 28068 - 29231 (-)
Gene ID: Rep_439_c_4_27
Type: pfam
Location: 29376 - 30803 (-)
Gene ID: Rep_439_c_4_28
Type: TC
Location: 30849 - 33227 (-)
Gene ID: Rep_439_c_4_29
Type: TF
Location: 33579 - 34370 (-)
Gene ID: Rep_439_c_4_30
Type: TC
Location: 34382 - 35434 (-)
Gene ID: Rep_439_c_4_31
Type: pfam
Location: 35443 - 36744 (-)
Gene ID: Rep_439_c_4_32
Type: TC
Location: 36780 - 39824 (-)
Gene ID: Rep_439_c_4_33
Type: pfam
Location: 39834 - 40862 (-)
Gene ID: Rep_439_c_4_34
Type: TC
Location: 41257 - 41877 (+)
Gene ID: Rep_439_c_4_35
Type: TC
Location: 41881 - 42699 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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