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Cluster: Rep_427_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_427_c_0 Rep_427_c_0_377 417189 419186 + CBM91 | GH43_10
TC Rep_427_c_0 Rep_427_c_0_378 419748 421949 - 3.A.10.1.10
pfam Rep_427_c_0 Rep_427_c_0_379 422119 425337 - MGS | ATP-grasp | ATP-grasp | CPSase_L_D2 | CPSase_L_D2 | CPSase_L_D3 | Dala_Dala_lig_C
CAZyme Rep_427_c_0 Rep_427_c_0_380 425375 426292 - CBM50
pfam Rep_427_c_0 Rep_427_c_0_381 426573 427247 + IspD | NTP_transf_3
pfam Rep_427_c_0 Rep_427_c_0_382 427255 429336 + DEAD | Helicase_C | ResIII | RecG_wedge | RecG_dom3_C
TC Rep_427_c_0 Rep_427_c_0_383 429408 429779 - 9.B.124.1.3
Gene ID: Rep_427_c_0_377
Type: CAZyme
Location: 417189 - 419186 (+)
Gene ID: Rep_427_c_0_378
Type: TC
Location: 419748 - 421949 (-)
Gene ID: Rep_427_c_0_379
Type: pfam
Location: 422119 - 425337 (-)
Gene ID: Rep_427_c_0_380
Type: CAZyme
Location: 425375 - 426292 (-)
Gene ID: Rep_427_c_0_381
Type: pfam
Location: 426573 - 427247 (+)
Gene ID: Rep_427_c_0_382
Type: pfam
Location: 427255 - 429336 (+)
Gene ID: Rep_427_c_0_383
Type: TC
Location: 429408 - 429779 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_427_c_0_380 vegetarian > vegan 1.47722 0.00367
Rep_427_c_0_381 vegetarian > vegan 1.21810 0.00367
Rep_427_c_0_383 vegetarian > vegan 2.47077 0.00367

🧭 Explore Read Mapping of CGC

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