Cluster: Rep_427_CGC41
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_427
- CGC Family ID: CGCFAM_09574
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_427_c_15 | Rep_427_c_15_1 | 2 | 1717 | - | PL11_1 |
| TC | Rep_427_c_15 | Rep_427_c_15_2 | 1921 | 3606 | - | 3.A.1.120.6 |
| pfam | Rep_427_c_15 | Rep_427_c_15_3 | 3637 | 4200 | - | Pep_deformylase |
| pfam | Rep_427_c_15 | Rep_427_c_15_4 | 4197 | 4625 | - | RuvX |
| CAZyme | Rep_427_c_15 | Rep_427_c_15_5 | 4771 | 7935 | + | PL11_1 |
| CAZyme | Rep_427_c_15 | Rep_427_c_15_6 | 8066 | 9793 | + | PL11_1 |
Gene ID: Rep_427_c_15_1
Type: CAZyme
Location: 2 - 1717 (-)
Type: CAZyme
Location: 2 - 1717 (-)
Gene ID: Rep_427_c_15_2
Type: TC
Location: 1921 - 3606 (-)
Type: TC
Location: 1921 - 3606 (-)
Gene ID: Rep_427_c_15_3
Type: pfam
Location: 3637 - 4200 (-)
Type: pfam
Location: 3637 - 4200 (-)
Gene ID: Rep_427_c_15_4
Type: pfam
Location: 4197 - 4625 (-)
Type: pfam
Location: 4197 - 4625 (-)
Gene ID: Rep_427_c_15_5
Type: CAZyme
Location: 4771 - 7935 (+)
Type: CAZyme
Location: 4771 - 7935 (+)
Gene ID: Rep_427_c_15_6
Type: CAZyme
Location: 8066 - 9793 (+)
Type: CAZyme
Location: 8066 - 9793 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
UBA11471
Genus
Caccoplasma
Species
Caccoplasma sp900547555
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_427_c_15_1 | vegetarian > vegan | 1.46604 | 0.00367 |
| Rep_427_c_15_3 | vegetarian > vegan | 1.23845 | 0.00367 |
| Rep_427_c_15_4 | vegetarian > vegan | 1.93672 | 0.00367 |
| Rep_427_c_15_5 | vegetarian > vegan | 1.49215 | 0.00367 |
| Rep_427_c_15_6 | vegetarian > vegan | 1.36790 | 0.00367 |