Cluster: Rep_427_CGC40
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_427
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_427_c_12 | Rep_427_c_12_2 | 3407 | 4675 | - | 3.D.5.1.1 |
| TC | Rep_427_c_12 | Rep_427_c_12_3 | 4689 | 5303 | - | 3.D.5.1.1 |
| TC | Rep_427_c_12 | Rep_427_c_12_4 | 5328 | 5954 | - | 3.D.5.1.1 |
| TC | Rep_427_c_12 | Rep_427_c_12_5 | 5970 | 6671 | - | 3.D.5.1.1 |
| TC | Rep_427_c_12 | Rep_427_c_12_6 | 6684 | 7847 | - | 3.D.5.1.1 |
| TC | Rep_427_c_12 | Rep_427_c_12_7 | 7917 | 9263 | - | 3.D.5.1.1 |
| pfam | Rep_427_c_12 | Rep_427_c_12_8 | 10051 | 11238 | + | HlyD_3 | HlyD_D23 |
| TC | Rep_427_c_12 | Rep_427_c_12_9 | 11251 | 14346 | + | 2.A.6.1.5 |
| pfam | Rep_427_c_12 | Rep_427_c_12_10 | 14339 | 15517 | + | OEP | OEP |
| TC | Rep_427_c_12 | Rep_427_c_12_11 | 15739 | 16869 | + | 3.A.1.13.2 |
| TC | Rep_427_c_12 | Rep_427_c_12_12 | 16866 | 17891 | + | 3.A.1.13.2 |
| TC | Rep_427_c_12 | Rep_427_c_12_13 | 17891 | 18964 | + | 3.A.1.13.2 |
| CAZyme | Rep_427_c_12 | Rep_427_c_12_14 | 19401 | 20531 | - | GT19 |
Gene ID: Rep_427_c_12_2
Type: TC
Location: 3407 - 4675 (-)
Type: TC
Location: 3407 - 4675 (-)
Gene ID: Rep_427_c_12_3
Type: TC
Location: 4689 - 5303 (-)
Type: TC
Location: 4689 - 5303 (-)
Gene ID: Rep_427_c_12_4
Type: TC
Location: 5328 - 5954 (-)
Type: TC
Location: 5328 - 5954 (-)
Gene ID: Rep_427_c_12_5
Type: TC
Location: 5970 - 6671 (-)
Type: TC
Location: 5970 - 6671 (-)
Gene ID: Rep_427_c_12_6
Type: TC
Location: 6684 - 7847 (-)
Type: TC
Location: 6684 - 7847 (-)
Gene ID: Rep_427_c_12_7
Type: TC
Location: 7917 - 9263 (-)
Type: TC
Location: 7917 - 9263 (-)
Gene ID: Rep_427_c_12_8
Type: pfam
Location: 10051 - 11238 (+)
Type: pfam
Location: 10051 - 11238 (+)
Gene ID: Rep_427_c_12_9
Type: TC
Location: 11251 - 14346 (+)
Type: TC
Location: 11251 - 14346 (+)
Gene ID: Rep_427_c_12_10
Type: pfam
Location: 14339 - 15517 (+)
Type: pfam
Location: 14339 - 15517 (+)
Gene ID: Rep_427_c_12_11
Type: TC
Location: 15739 - 16869 (+)
Type: TC
Location: 15739 - 16869 (+)
Gene ID: Rep_427_c_12_12
Type: TC
Location: 16866 - 17891 (+)
Type: TC
Location: 16866 - 17891 (+)
Gene ID: Rep_427_c_12_13
Type: TC
Location: 17891 - 18964 (+)
Type: TC
Location: 17891 - 18964 (+)
Gene ID: Rep_427_c_12_14
Type: CAZyme
Location: 19401 - 20531 (-)
Type: CAZyme
Location: 19401 - 20531 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
UBA11471
Genus
Caccoplasma
Species
Caccoplasma sp900547555
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_427_c_12_3 | vegetarian > vegan | 1.14539 | 0.00367 |
| Rep_427_c_12_5 | vegetarian > vegan | 1.53174 | 0.00367 |
| Rep_427_c_12_7 | vegetarian > vegan | 2.19747 | 0.00367 |
| Rep_427_c_12_8 | vegetarian > vegan | 1.46810 | 0.00367 |
| Rep_427_c_12_10 | vegetarian > vegan | 1.53627 | 0.00367 |
| Rep_427_c_12_11 | vegan > omnivore | 1.28850 | 0.00237 |
| Rep_427_c_12_12 | vegetarian > vegan | 1.37649 | 0.00367 |
| Rep_427_c_12_13 | vegetarian > vegan | 2.69154 | 0.00367 |