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Cluster: Rep_427_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_427_c_0 Rep_427_c_0_227 223585 225369 + 3.A.18.1.1
pfam Rep_427_c_0 Rep_427_c_0_228 225428 226936 + GH3 | GH3_M | GH3_C
pfam Rep_427_c_0 Rep_427_c_0_229 226967 229006 + tRNA-synt_1 | tRNA_bind | Anticodon_1 | tRNA-synt_1g | Anticodon_3
TC Rep_427_c_0 Rep_427_c_0_230 229062 230501 + 2.A.66.2.6
CAZyme Rep_427_c_0 Rep_427_c_0_231 230536 231285 + GT2
pfam Rep_427_c_0 Rep_427_c_0_232 231365 232096 - DNA_alkylation
pfam Rep_427_c_0 Rep_427_c_0_233 232107 233075 - 2-Hacid_dh | 2-Hacid_dh_C | NAD_binding_2 | F420_oxidored
TC Rep_427_c_0 Rep_427_c_0_234 233268 234500 + 9.B.156.3.1
pfam Rep_427_c_0 Rep_427_c_0_235 234620 235075 + YbeY
TC Rep_427_c_0 Rep_427_c_0_236 235079 236956 + 1.C.39.4.5
Gene ID: Rep_427_c_0_227
Type: TC
Location: 223585 - 225369 (+)
Gene ID: Rep_427_c_0_228
Type: pfam
Location: 225428 - 226936 (+)
Gene ID: Rep_427_c_0_229
Type: pfam
Location: 226967 - 229006 (+)
Gene ID: Rep_427_c_0_230
Type: TC
Location: 229062 - 230501 (+)
Gene ID: Rep_427_c_0_231
Type: CAZyme
Location: 230536 - 231285 (+)
Gene ID: Rep_427_c_0_232
Type: pfam
Location: 231365 - 232096 (-)
Gene ID: Rep_427_c_0_233
Type: pfam
Location: 232107 - 233075 (-)
Gene ID: Rep_427_c_0_234
Type: TC
Location: 233268 - 234500 (+)
Gene ID: Rep_427_c_0_235
Type: pfam
Location: 234620 - 235075 (+)
Gene ID: Rep_427_c_0_236
Type: TC
Location: 235079 - 236956 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_427_c_0_230 vegetarian > vegan 1.29018 0.00367
Rep_427_c_0_232 vegetarian > vegan 2.36120 0.00367
Rep_427_c_0_233 vegetarian > vegan 1.98859 0.00367

🧭 Explore Read Mapping of CGC

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