Cluster: Rep_427_CGC39
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_427
- CGC Family ID: CGCFAM_02872
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_427_c_11 | Rep_427_c_11_25 | 25290 | 26603 | - | 2.A.6.2.26 |
| TC | Rep_427_c_11 | Rep_427_c_11_26 | 26600 | 29638 | - | 2.A.6.2.33 |
| TC | Rep_427_c_11 | Rep_427_c_11_27 | 29656 | 30729 | - | 2.A.6.2.28 |
| NULL(UNKNOWN) | Rep_427_c_11 | Rep_427_c_11_28 | 30931 | 31032 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | Rep_427_c_11 | Rep_427_c_11_29 | 31029 | 31985 | + | HTH_AraC |
| CAZyme | Rep_427_c_11 | Rep_427_c_11_30 | 32413 | 33480 | - | GH43_19 |
| sulfatase | Rep_427_c_11 | Rep_427_c_11_31 | 33486 | 34136 | - | S1_14 |
| pfam | Rep_427_c_11 | Rep_427_c_11_32 | 34161 | 34421 | - | Acetyltransf_1 | Acetyltransf_CG |
| TC | Rep_427_c_11 | Rep_427_c_11_33 | 34444 | 35727 | - | 2.A.40.7.6 |
| pfam | Rep_427_c_11 | Rep_427_c_11_34 | 35800 | 36261 | - | SPOR |
| CAZyme | Rep_427_c_11 | Rep_427_c_11_35 | 36471 | 39344 | + | GH31_4 |
| CAZyme | Rep_427_c_11 | Rep_427_c_11_36 | 39357 | 41570 | + | GH3 |
Gene ID: Rep_427_c_11_25
Type: TC
Location: 25290 - 26603 (-)
Type: TC
Location: 25290 - 26603 (-)
Gene ID: Rep_427_c_11_26
Type: TC
Location: 26600 - 29638 (-)
Type: TC
Location: 26600 - 29638 (-)
Gene ID: Rep_427_c_11_27
Type: TC
Location: 29656 - 30729 (-)
Type: TC
Location: 29656 - 30729 (-)
Gene ID: Rep_427_c_11_28
Type:
Location: 30931 - 31032 (+)
Type:
Location: 30931 - 31032 (+)
Gene ID: Rep_427_c_11_29
Type: TF
Location: 31029 - 31985 (+)
Type: TF
Location: 31029 - 31985 (+)
Gene ID: Rep_427_c_11_30
Type: CAZyme
Location: 32413 - 33480 (-)
Type: CAZyme
Location: 32413 - 33480 (-)
Gene ID: Rep_427_c_11_31
Type: sulfatase
Location: 33486 - 34136 (-)
Type: sulfatase
Location: 33486 - 34136 (-)
Gene ID: Rep_427_c_11_32
Type: pfam
Location: 34161 - 34421 (-)
Type: pfam
Location: 34161 - 34421 (-)
Gene ID: Rep_427_c_11_33
Type: TC
Location: 34444 - 35727 (-)
Type: TC
Location: 34444 - 35727 (-)
Gene ID: Rep_427_c_11_34
Type: pfam
Location: 35800 - 36261 (-)
Type: pfam
Location: 35800 - 36261 (-)
Gene ID: Rep_427_c_11_35
Type: CAZyme
Location: 36471 - 39344 (+)
Type: CAZyme
Location: 36471 - 39344 (+)
Gene ID: Rep_427_c_11_36
Type: CAZyme
Location: 39357 - 41570 (+)
Type: CAZyme
Location: 39357 - 41570 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
UBA11471
Genus
Caccoplasma
Species
Caccoplasma sp900547555
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_427_c_11_27 | vegetarian > vegan | 2.31826 | 0.00367 |
| Rep_427_c_11_29 | vegetarian > vegan | 1.78876 | 0.00367 |
| Rep_427_c_11_30 | vegetarian > vegan | 1.90195 | 0.00367 |
| Rep_427_c_11_31 | vegetarian > vegan | 1.12488 | 0.00367 |
| Rep_427_c_11_32 | vegetarian > vegan | 1.83243 | 0.00367 |
| Rep_427_c_11_34 | vegetarian > vegan | 3.23989 | 0.00367 |
| Rep_427_c_11_36 | vegetarian > vegan | 1.58864 | 0.00367 |