Cluster: Rep_427_CGC38
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_427
- CGC Family ID: CGCFAM_05978
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_427_c_10 | Rep_427_c_10_13 | 19834 | 23094 | - | 1.B.14.6.1 |
| NULL(UNKNOWN) | Rep_427_c_10 | Rep_427_c_10_14 | 23103 | 25526 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_427_c_10 | Rep_427_c_10_15 | 25677 | 27734 | - | PL1_2 |
| TF | Rep_427_c_10 | Rep_427_c_10_16 | 28205 | 32449 | - | HTH_AraC |
| CAZyme | Rep_427_c_10 | Rep_427_c_10_17 | 32912 | 35500 | + | GH3 |
| peptidase | Rep_427_c_10 | Rep_427_c_10_18 | 35540 | 36823 | + | S12.UPW |
| TC | Rep_427_c_10 | Rep_427_c_10_19 | 37066 | 38475 | + | 2.A.50.2.1 |
Gene ID: Rep_427_c_10_13
Type: TC
Location: 19834 - 23094 (-)
Type: TC
Location: 19834 - 23094 (-)
Gene ID: Rep_427_c_10_14
Type:
Location: 23103 - 25526 (-)
Type:
Location: 23103 - 25526 (-)
Gene ID: Rep_427_c_10_15
Type: CAZyme
Location: 25677 - 27734 (-)
Type: CAZyme
Location: 25677 - 27734 (-)
Gene ID: Rep_427_c_10_16
Type: TF
Location: 28205 - 32449 (-)
Type: TF
Location: 28205 - 32449 (-)
Gene ID: Rep_427_c_10_17
Type: CAZyme
Location: 32912 - 35500 (+)
Type: CAZyme
Location: 32912 - 35500 (+)
Gene ID: Rep_427_c_10_18
Type: peptidase
Location: 35540 - 36823 (+)
Type: peptidase
Location: 35540 - 36823 (+)
Gene ID: Rep_427_c_10_19
Type: TC
Location: 37066 - 38475 (+)
Type: TC
Location: 37066 - 38475 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
UBA11471
Genus
Caccoplasma
Species
Caccoplasma sp900547555
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_427_c_10_13 | vegetarian > vegan | 2.06666 | 0.00367 |
| Rep_427_c_10_14 | vegetarian > vegan | 1.70873 | 0.00367 |
| Rep_427_c_10_15 | vegetarian > vegan | 1.94432 | 0.00367 |
| Rep_427_c_10_16 | vegetarian > vegan | 1.28922 | 0.00367 |
| Rep_427_c_10_17 | vegetarian > vegan | 1.15030 | 0.00367 |
| Rep_427_c_10_18 | vegetarian > vegan | 1.12129 | 0.00367 |