Cluster: Rep_427_CGC33
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_427
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_427_c_7 | Rep_427_c_7_29 | 38872 | 40734 | - | 4.C.1.1.14 |
| peptidase | Rep_427_c_7 | Rep_427_c_7_30 | 40897 | 41961 | + | M20.UPA |
| NULL(UNKNOWN) | Rep_427_c_7 | Rep_427_c_7_31 | 42654 | 43487 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_427_c_7 | Rep_427_c_7_32 | 43681 | 44709 | - | GT2 |
| CAZyme | Rep_427_c_7 | Rep_427_c_7_33 | 44861 | 45841 | - | GT2 |
Gene ID: Rep_427_c_7_29
Type: TC
Location: 38872 - 40734 (-)
Type: TC
Location: 38872 - 40734 (-)
Gene ID: Rep_427_c_7_30
Type: peptidase
Location: 40897 - 41961 (+)
Type: peptidase
Location: 40897 - 41961 (+)
Gene ID: Rep_427_c_7_31
Type:
Location: 42654 - 43487 (-)
Type:
Location: 42654 - 43487 (-)
Gene ID: Rep_427_c_7_32
Type: CAZyme
Location: 43681 - 44709 (-)
Type: CAZyme
Location: 43681 - 44709 (-)
Gene ID: Rep_427_c_7_33
Type: CAZyme
Location: 44861 - 45841 (-)
Type: CAZyme
Location: 44861 - 45841 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
UBA11471
Genus
Caccoplasma
Species
Caccoplasma sp900547555
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_427_c_7_29 | vegetarian > omnivore | 2.31983 | 0.03946 |
| Rep_427_c_7_29 | vegetarian > vegan | 2.63766 | 0.00367 |
| Rep_427_c_7_30 | vegetarian > vegan | 3.05518 | 0.00367 |
| Rep_427_c_7_31 | vegetarian > vegan | 2.18671 | 0.00367 |
| Rep_427_c_7_32 | vegetarian > vegan | 3.05478 | 0.00367 |
| Rep_427_c_7_33 | vegetarian > vegan | 3.29861 | 0.00367 |