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Cluster: Rep_427_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_427_c_4 Rep_427_c_4_138 182364 182912 - 2.A.51.1.6
TC Rep_427_c_4 Rep_427_c_4_139 182909 183454 - 2.A.51.1.6
STP Rep_427_c_4 Rep_427_c_4_140 183959 184579 + GAF
TC Rep_427_c_4 Rep_427_c_4_141 184801 187455 - 3.A.3.2.21
TF Rep_427_c_4 Rep_427_c_4_142 187554 188441 + HTH_AraC
NULL(UNKNOWN) Rep_427_c_4 Rep_427_c_4_143 188699 188872 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_427_c_4 Rep_427_c_4_144 188932 190506 + GH28
Gene ID: Rep_427_c_4_138
Type: TC
Location: 182364 - 182912 (-)
Gene ID: Rep_427_c_4_139
Type: TC
Location: 182909 - 183454 (-)
Gene ID: Rep_427_c_4_140
Type: STP
Location: 183959 - 184579 (+)
Gene ID: Rep_427_c_4_141
Type: TC
Location: 184801 - 187455 (-)
Gene ID: Rep_427_c_4_142
Type: TF
Location: 187554 - 188441 (+)
Gene ID: Rep_427_c_4_143
Type:
Location: 188699 - 188872 (-)
Gene ID: Rep_427_c_4_144
Type: CAZyme
Location: 188932 - 190506 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_427_c_4_140 vegetarian > vegan 1.59825 0.00367
Rep_427_c_4_144 vegetarian > vegan 1.97010 0.00367

🧭 Explore Read Mapping of CGC

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