Cluster: Rep_427_CGC24
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_427
- CGC Family ID: CGCFAM_01986
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_427_c_3 | Rep_427_c_3_89 | 125521 | 126978 | - | 1.B.73.2.2 |
| pfam | Rep_427_c_3 | Rep_427_c_3_90 | 126984 | 127412 | - | Lipocalin_8 |
| CAZyme | Rep_427_c_3 | Rep_427_c_3_91 | 127589 | 128284 | - | GT26 |
| pfam | Rep_427_c_3 | Rep_427_c_3_92 | 128512 | 129414 | - | ATPgrasp_TupA |
| CAZyme | Rep_427_c_3 | Rep_427_c_3_93 | 129429 | 130484 | - | GT4 |
| CAZyme | Rep_427_c_3 | Rep_427_c_3_94 | 130512 | 131552 | - | GT4 |
| NULL(UNKNOWN) | Rep_427_c_3 | Rep_427_c_3_95 | 131549 | 132994 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_427_c_3 | Rep_427_c_3_96 | 133199 | 135517 | - | 8.A.3.3.4 |
| pfam | Rep_427_c_3 | Rep_427_c_3_97 | 135546 | 136349 | - | Poly_export | SLBB_2 |
| CAZyme | Rep_427_c_3 | Rep_427_c_3_98 | 136600 | 137802 | + | GT2 |
| pfam | Rep_427_c_3 | Rep_427_c_3_99 | 138020 | 138280 | - | HSP20 |
| NULL(UNKNOWN) | Rep_427_c_3 | Rep_427_c_3_100 | 138445 | 138978 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_427_c_3 | Rep_427_c_3_101 | 139129 | 140298 | + | GH171 |
Gene ID: Rep_427_c_3_89
Type: TC
Location: 125521 - 126978 (-)
Type: TC
Location: 125521 - 126978 (-)
Gene ID: Rep_427_c_3_90
Type: pfam
Location: 126984 - 127412 (-)
Type: pfam
Location: 126984 - 127412 (-)
Gene ID: Rep_427_c_3_91
Type: CAZyme
Location: 127589 - 128284 (-)
Type: CAZyme
Location: 127589 - 128284 (-)
Gene ID: Rep_427_c_3_92
Type: pfam
Location: 128512 - 129414 (-)
Type: pfam
Location: 128512 - 129414 (-)
Gene ID: Rep_427_c_3_93
Type: CAZyme
Location: 129429 - 130484 (-)
Type: CAZyme
Location: 129429 - 130484 (-)
Gene ID: Rep_427_c_3_94
Type: CAZyme
Location: 130512 - 131552 (-)
Type: CAZyme
Location: 130512 - 131552 (-)
Gene ID: Rep_427_c_3_95
Type:
Location: 131549 - 132994 (-)
Type:
Location: 131549 - 132994 (-)
Gene ID: Rep_427_c_3_96
Type: TC
Location: 133199 - 135517 (-)
Type: TC
Location: 133199 - 135517 (-)
Gene ID: Rep_427_c_3_97
Type: pfam
Location: 135546 - 136349 (-)
Type: pfam
Location: 135546 - 136349 (-)
Gene ID: Rep_427_c_3_98
Type: CAZyme
Location: 136600 - 137802 (+)
Type: CAZyme
Location: 136600 - 137802 (+)
Gene ID: Rep_427_c_3_99
Type: pfam
Location: 138020 - 138280 (-)
Type: pfam
Location: 138020 - 138280 (-)
Gene ID: Rep_427_c_3_100
Type:
Location: 138445 - 138978 (-)
Type:
Location: 138445 - 138978 (-)
Gene ID: Rep_427_c_3_101
Type: CAZyme
Location: 139129 - 140298 (+)
Type: CAZyme
Location: 139129 - 140298 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
UBA11471
Genus
Caccoplasma
Species
Caccoplasma sp900547555
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_427_c_3_89 | vegetarian > vegan | 3.68651 | 0.00367 |
| Rep_427_c_3_90 | vegetarian > vegan | 1.80133 | 0.00367 |
| Rep_427_c_3_98 | vegetarian > vegan | 1.17496 | 0.00367 |
| Rep_427_c_3_99 | vegetarian > vegan | 1.58257 | 0.00367 |
| Rep_427_c_3_100 | vegetarian > vegan | 2.09470 | 0.00367 |
| Rep_427_c_3_101 | vegetarian > vegan | 3.60660 | 0.00367 |