Cluster: Rep_427_CGC22
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 6
- Substrate:
- Genome ID: Rep_427
- CGC Family ID: CGCFAM_02942
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_427_c_3 | Rep_427_c_3_1 | 402 | 3266 | + | PL1_2 |
| CAZyme | Rep_427_c_3 | Rep_427_c_3_2 | 3330 | 4127 | + | CE12 |
| CAZyme | Rep_427_c_3 | Rep_427_c_3_3 | 4208 | 7186 | + | GH2 |
| CAZyme | Rep_427_c_3 | Rep_427_c_3_4 | 7199 | 10009 | + | GH106 |
| pfam | Rep_427_c_3 | Rep_427_c_3_5 | 10225 | 11706 | + | FGGY_N | FGGY_C |
| pfam | Rep_427_c_3 | Rep_427_c_3_6 | 11736 | 12986 | + | RhaA |
| TC | Rep_427_c_3 | Rep_427_c_3_7 | 13063 | 14100 | + | 2.A.7.6.1 |
| pfam | Rep_427_c_3 | Rep_427_c_3_8 | 14133 | 14942 | + | Aldolase_II |
| CAZyme | Rep_427_c_3 | Rep_427_c_3_9 | 14971 | 16284 | + | GH105 |
| CAZyme | Rep_427_c_3 | Rep_427_c_3_10 | 16363 | 17796 | + | GH28 |
| NULL(UNKNOWN) | Rep_427_c_3 | Rep_427_c_3_11 | 18180 | 20327 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_427_c_3 | Rep_427_c_3_12 | 20390 | 22822 | + | Fasciclin |
| TC | Rep_427_c_3 | Rep_427_c_3_13 | 22846 | 26145 | + | 1.B.14.6.1 |
| TC | Rep_427_c_3 | Rep_427_c_3_14 | 26158 | 27696 | + | 8.A.46.1.4 |
| pfam | Rep_427_c_3 | Rep_427_c_3_15 | 27716 | 29371 | + | Fasciclin | Fasciclin |
| pfam | Rep_427_c_3 | Rep_427_c_3_16 | 29377 | 31176 | + | Fasciclin |
| TC | Rep_427_c_3 | Rep_427_c_3_17 | 31197 | 34328 | + | 1.B.14.6.2 |
Gene ID: Rep_427_c_3_1
Type: CAZyme
Location: 402 - 3266 (+)
Type: CAZyme
Location: 402 - 3266 (+)
Gene ID: Rep_427_c_3_2
Type: CAZyme
Location: 3330 - 4127 (+)
Type: CAZyme
Location: 3330 - 4127 (+)
Gene ID: Rep_427_c_3_3
Type: CAZyme
Location: 4208 - 7186 (+)
Type: CAZyme
Location: 4208 - 7186 (+)
Gene ID: Rep_427_c_3_4
Type: CAZyme
Location: 7199 - 10009 (+)
Type: CAZyme
Location: 7199 - 10009 (+)
Gene ID: Rep_427_c_3_5
Type: pfam
Location: 10225 - 11706 (+)
Type: pfam
Location: 10225 - 11706 (+)
Gene ID: Rep_427_c_3_6
Type: pfam
Location: 11736 - 12986 (+)
Type: pfam
Location: 11736 - 12986 (+)
Gene ID: Rep_427_c_3_7
Type: TC
Location: 13063 - 14100 (+)
Type: TC
Location: 13063 - 14100 (+)
Gene ID: Rep_427_c_3_8
Type: pfam
Location: 14133 - 14942 (+)
Type: pfam
Location: 14133 - 14942 (+)
Gene ID: Rep_427_c_3_9
Type: CAZyme
Location: 14971 - 16284 (+)
Type: CAZyme
Location: 14971 - 16284 (+)
Gene ID: Rep_427_c_3_10
Type: CAZyme
Location: 16363 - 17796 (+)
Type: CAZyme
Location: 16363 - 17796 (+)
Gene ID: Rep_427_c_3_11
Type:
Location: 18180 - 20327 (+)
Type:
Location: 18180 - 20327 (+)
Gene ID: Rep_427_c_3_12
Type: pfam
Location: 20390 - 22822 (+)
Type: pfam
Location: 20390 - 22822 (+)
Gene ID: Rep_427_c_3_13
Type: TC
Location: 22846 - 26145 (+)
Type: TC
Location: 22846 - 26145 (+)
Gene ID: Rep_427_c_3_14
Type: TC
Location: 26158 - 27696 (+)
Type: TC
Location: 26158 - 27696 (+)
Gene ID: Rep_427_c_3_15
Type: pfam
Location: 27716 - 29371 (+)
Type: pfam
Location: 27716 - 29371 (+)
Gene ID: Rep_427_c_3_16
Type: pfam
Location: 29377 - 31176 (+)
Type: pfam
Location: 29377 - 31176 (+)
Gene ID: Rep_427_c_3_17
Type: TC
Location: 31197 - 34328 (+)
Type: TC
Location: 31197 - 34328 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
UBA11471
Genus
Caccoplasma
Species
Caccoplasma sp900547555
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_427_c_3_1 | vegetarian > vegan | 2.72060 | 0.00367 |
| Rep_427_c_3_2 | vegetarian > vegan | 2.85998 | 0.00367 |
| Rep_427_c_3_4 | vegetarian > vegan | 2.18220 | 0.00367 |
| Rep_427_c_3_7 | vegetarian > vegan | 2.48478 | 0.00367 |
| Rep_427_c_3_9 | vegetarian > vegan | 1.91579 | 0.00367 |
| Rep_427_c_3_10 | vegetarian > vegan | 1.70730 | 0.00367 |
| Rep_427_c_3_12 | vegetarian > vegan | 1.95599 | 0.00367 |
| Rep_427_c_3_13 | vegetarian > vegan | 1.49243 | 0.00367 |
| Rep_427_c_3_14 | vegetarian > vegan | 1.64413 | 0.00367 |
| Rep_427_c_3_15 | vegetarian > vegan | 2.15947 | 0.00367 |
| Rep_427_c_3_16 | vegetarian > vegan | 2.86352 | 0.00367 |
| Rep_427_c_3_17 | vegetarian > vegan | 1.70322 | 0.00367 |