Cluster: Rep_410_CGC24
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 7
- Substrate:
- Genome ID: Rep_410
- CGC Family ID: CGCFAM_07970
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_410_c_93 | Rep_410_c_93_3 | 3590 | 5536 | - | CE20 | CE20 |
| CAZyme | Rep_410_c_93 | Rep_410_c_93_4 | 5576 | 8458 | - | GH2 |
| pfam | Rep_410_c_93 | Rep_410_c_93_5 | 8455 | 10455 | - | FG-GAP | FG-GAP_3 | FG-GAP_3 |
| CAZyme | Rep_410_c_93 | Rep_410_c_93_6 | 10478 | 11518 | - | GH43_24 |
| TF | Rep_410_c_93 | Rep_410_c_93_7 | 11534 | 15574 | - | HTH_AraC |
| CAZyme | Rep_410_c_93 | Rep_410_c_93_8 | 15788 | 17803 | + | GH2 |
| CAZyme | Rep_410_c_93 | Rep_410_c_93_9 | 17817 | 20060 | + | GH92 |
| pfam | Rep_410_c_93 | Rep_410_c_93_10 | 20212 | 21462 | + | DNA_methylase |
| pfam | Rep_410_c_93 | Rep_410_c_93_11 | 21466 | 22458 | + | HNH_2 |
| CAZyme | Rep_410_c_93 | Rep_410_c_93_12 | 22574 | 24019 | + | GH125 |
| CAZyme | Rep_410_c_93 | Rep_410_c_93_13 | 24287 | 26416 | + | GH36 |
| pfam | Rep_410_c_93 | Rep_410_c_93_14 | 26461 | 27795 | + | NHL | TIG |
| TC | Rep_410_c_93 | Rep_410_c_93_15 | 27884 | 30985 | + | 1.B.14.6.1 |
Gene ID: Rep_410_c_93_3
Type: CAZyme
Location: 3590 - 5536 (-)
Type: CAZyme
Location: 3590 - 5536 (-)
Gene ID: Rep_410_c_93_4
Type: CAZyme
Location: 5576 - 8458 (-)
Type: CAZyme
Location: 5576 - 8458 (-)
Gene ID: Rep_410_c_93_5
Type: pfam
Location: 8455 - 10455 (-)
Type: pfam
Location: 8455 - 10455 (-)
Gene ID: Rep_410_c_93_6
Type: CAZyme
Location: 10478 - 11518 (-)
Type: CAZyme
Location: 10478 - 11518 (-)
Gene ID: Rep_410_c_93_7
Type: TF
Location: 11534 - 15574 (-)
Type: TF
Location: 11534 - 15574 (-)
Gene ID: Rep_410_c_93_8
Type: CAZyme
Location: 15788 - 17803 (+)
Type: CAZyme
Location: 15788 - 17803 (+)
Gene ID: Rep_410_c_93_9
Type: CAZyme
Location: 17817 - 20060 (+)
Type: CAZyme
Location: 17817 - 20060 (+)
Gene ID: Rep_410_c_93_10
Type: pfam
Location: 20212 - 21462 (+)
Type: pfam
Location: 20212 - 21462 (+)
Gene ID: Rep_410_c_93_11
Type: pfam
Location: 21466 - 22458 (+)
Type: pfam
Location: 21466 - 22458 (+)
Gene ID: Rep_410_c_93_12
Type: CAZyme
Location: 22574 - 24019 (+)
Type: CAZyme
Location: 22574 - 24019 (+)
Gene ID: Rep_410_c_93_13
Type: CAZyme
Location: 24287 - 26416 (+)
Type: CAZyme
Location: 24287 - 26416 (+)
Gene ID: Rep_410_c_93_14
Type: pfam
Location: 26461 - 27795 (+)
Type: pfam
Location: 26461 - 27795 (+)
Gene ID: Rep_410_c_93_15
Type: TC
Location: 27884 - 30985 (+)
Type: TC
Location: 27884 - 30985 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Duncaniella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.