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Cluster: Rep_40_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_40_c_9 Rep_40_c_9_3 2816 5914 - GH148
NULL(UNKNOWN) Rep_40_c_9 Rep_40_c_9_4 6041 6487 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_40_c_9 Rep_40_c_9_5 6702 8123 + 2.A.62.1.3
CAZyme Rep_40_c_9 Rep_40_c_9_6 8199 9893 - GH110
STP Rep_40_c_9 Rep_40_c_9_7 10037 10549 + SKI
pfam Rep_40_c_9 Rep_40_c_9_8 10771 12300 - OEP | OEP
TC Rep_40_c_9 Rep_40_c_9_9 12314 15577 - 2.A.6.2.12
TC Rep_40_c_9 Rep_40_c_9_10 15598 16965 - 2.A.6.2.39
TC Rep_40_c_9 Rep_40_c_9_11 17087 19831 - 4.A.2.1.17
NULL(UNKNOWN) Rep_40_c_9 Rep_40_c_9_12 20663 20806 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_40_c_9 Rep_40_c_9_13 20806 22542 - 2.A.22.4.2
TC Rep_40_c_9 Rep_40_c_9_14 22549 23232 - 3.A.1.114.1
Gene ID: Rep_40_c_9_3
Type: CAZyme
Location: 2816 - 5914 (-)
Gene ID: Rep_40_c_9_4
Type:
Location: 6041 - 6487 (-)
Gene ID: Rep_40_c_9_5
Type: TC
Location: 6702 - 8123 (+)
Gene ID: Rep_40_c_9_6
Type: CAZyme
Location: 8199 - 9893 (-)
Gene ID: Rep_40_c_9_7
Type: STP
Location: 10037 - 10549 (+)
Gene ID: Rep_40_c_9_8
Type: pfam
Location: 10771 - 12300 (-)
Gene ID: Rep_40_c_9_9
Type: TC
Location: 12314 - 15577 (-)
Gene ID: Rep_40_c_9_10
Type: TC
Location: 15598 - 16965 (-)
Gene ID: Rep_40_c_9_11
Type: TC
Location: 17087 - 19831 (-)
Gene ID: Rep_40_c_9_12
Type:
Location: 20663 - 20806 (-)
Gene ID: Rep_40_c_9_13
Type: TC
Location: 20806 - 22542 (-)
Gene ID: Rep_40_c_9_14
Type: TC
Location: 22549 - 23232 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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