Cluster: Rep_40_CGC5
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_40
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_40_c_7 | Rep_40_c_7_27 | 26729 | 28873 | + | GH50 |
| CAZyme | Rep_40_c_7 | Rep_40_c_7_28 | 29019 | 31154 | + | GH50 |
| CAZyme | Rep_40_c_7 | Rep_40_c_7_29 | 31167 | 32861 | + | GH50 |
| pfam | Rep_40_c_7 | Rep_40_c_7_30 | 32949 | 36215 | + | CBM-like | HZS_alpha |
| pfam | Rep_40_c_7 | Rep_40_c_7_31 | 36258 | 37226 | + | 2-Hacid_dh | 2-Hacid_dh_C |
| TC | Rep_40_c_7 | Rep_40_c_7_32 | 37686 | 39176 | - | 3.A.18.1.1 |
Gene ID: Rep_40_c_7_27
Type: CAZyme
Location: 26729 - 28873 (+)
Type: CAZyme
Location: 26729 - 28873 (+)
Gene ID: Rep_40_c_7_28
Type: CAZyme
Location: 29019 - 31154 (+)
Type: CAZyme
Location: 29019 - 31154 (+)
Gene ID: Rep_40_c_7_29
Type: CAZyme
Location: 31167 - 32861 (+)
Type: CAZyme
Location: 31167 - 32861 (+)
Gene ID: Rep_40_c_7_30
Type: pfam
Location: 32949 - 36215 (+)
Type: pfam
Location: 32949 - 36215 (+)
Gene ID: Rep_40_c_7_31
Type: pfam
Location: 36258 - 37226 (+)
Type: pfam
Location: 36258 - 37226 (+)
Gene ID: Rep_40_c_7_32
Type: TC
Location: 37686 - 39176 (-)
Type: TC
Location: 37686 - 39176 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Opitutales
Family
CAG-312
Genus
Merdousia
Species
Merdousia sp944389175
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.