dbCAN Logo

Cluster: Rep_40_CGC29

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_40_c_34 Rep_40_c_34_12 13269 13685 + 3.A.15.1.1
pfam Rep_40_c_34 Rep_40_c_34_13 14061 14612 - Rubrerythrin | RUBY_RBDX
CAZyme Rep_40_c_34 Rep_40_c_34_14 14673 16016 - CE7
peptidase Rep_40_c_34 Rep_40_c_34_15 16218 17186 + U32.UPW
pfam Rep_40_c_34 Rep_40_c_34_16 17271 18761 + tRNA-synt_2 | tRNA_anti-codon
TC Rep_40_c_34 Rep_40_c_34_17 18767 19993 + 3.A.1.125.5
TC Rep_40_c_34 Rep_40_c_34_18 19986 20699 + 3.A.1.125.5
STP Rep_40_c_34 Rep_40_c_34_19 20912 21313 + Glyoxalase
TC Rep_40_c_34 Rep_40_c_34_20 21338 22900 + 3.B.1.1.5
NULL(UNKNOWN) Rep_40_c_34 Rep_40_c_34_21 22918 23358 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_40_c_34 Rep_40_c_34_22 23378 23776 + Biotin_lipoyl | Biotin_lipoyl_2
TC Rep_40_c_34 Rep_40_c_34_23 23816 25396 + 3.B.1.1.2
Gene ID: Rep_40_c_34_12
Type: TC
Location: 13269 - 13685 (+)
Gene ID: Rep_40_c_34_13
Type: pfam
Location: 14061 - 14612 (-)
Gene ID: Rep_40_c_34_14
Type: CAZyme
Location: 14673 - 16016 (-)
Gene ID: Rep_40_c_34_15
Type: peptidase
Location: 16218 - 17186 (+)
Gene ID: Rep_40_c_34_16
Type: pfam
Location: 17271 - 18761 (+)
Gene ID: Rep_40_c_34_17
Type: TC
Location: 18767 - 19993 (+)
Gene ID: Rep_40_c_34_18
Type: TC
Location: 19986 - 20699 (+)
Gene ID: Rep_40_c_34_19
Type: STP
Location: 20912 - 21313 (+)
Gene ID: Rep_40_c_34_20
Type: TC
Location: 21338 - 22900 (+)
Gene ID: Rep_40_c_34_21
Type:
Location: 22918 - 23358 (+)
Gene ID: Rep_40_c_34_22
Type: pfam
Location: 23378 - 23776 (+)
Gene ID: Rep_40_c_34_23
Type: TC
Location: 23816 - 25396 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List