Cluster: Rep_40_CGC26
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_40
- CGC Family ID: CGCFAM_11178
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_40_c_32 | Rep_40_c_32_9 | 10488 | 11678 | + | 3.A.1.114.1 |
| pfam | Rep_40_c_32 | Rep_40_c_32_10 | 11686 | 13107 | + | Lyase_1 | ASL_C2 |
| CAZyme | Rep_40_c_32 | Rep_40_c_32_11 | 13412 | 15250 | - | GH129 |
| pfam | Rep_40_c_32 | Rep_40_c_32_12 | 16055 | 17218 | - | SUFBD_core |
| pfam | Rep_40_c_32 | Rep_40_c_32_13 | 17218 | 18627 | - | SUFBD_core | SufBD_N |
| TC | Rep_40_c_32 | Rep_40_c_32_14 | 18629 | 19366 | - | 3.A.1.27.4 |
Gene ID: Rep_40_c_32_9
Type: TC
Location: 10488 - 11678 (+)
Type: TC
Location: 10488 - 11678 (+)
Gene ID: Rep_40_c_32_10
Type: pfam
Location: 11686 - 13107 (+)
Type: pfam
Location: 11686 - 13107 (+)
Gene ID: Rep_40_c_32_11
Type: CAZyme
Location: 13412 - 15250 (-)
Type: CAZyme
Location: 13412 - 15250 (-)
Gene ID: Rep_40_c_32_12
Type: pfam
Location: 16055 - 17218 (-)
Type: pfam
Location: 16055 - 17218 (-)
Gene ID: Rep_40_c_32_13
Type: pfam
Location: 17218 - 18627 (-)
Type: pfam
Location: 17218 - 18627 (-)
Gene ID: Rep_40_c_32_14
Type: TC
Location: 18629 - 19366 (-)
Type: TC
Location: 18629 - 19366 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Opitutales
Family
CAG-312
Genus
Merdousia
Species
Merdousia sp944389175
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.