Cluster: Rep_40_CGC24
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_40
- CGC Family ID: CGCFAM_09353
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_40_c_31 | Rep_40_c_31_2 | 2878 | 4287 | + | GH28 |
| NULL(UNKNOWN) | Rep_40_c_31 | Rep_40_c_31_3 | 4319 | 4531 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_40_c_31 | Rep_40_c_31_4 | 4599 | 6689 | - | GIDA | GIDA | FAD_oxidored | SAM_GIDA_C |
| CAZyme | Rep_40_c_31 | Rep_40_c_31_5 | 7186 | 8718 | + | GH20 |
| TC | Rep_40_c_31 | Rep_40_c_31_6 | 9315 | 10181 | + | 3.A.2.1.5 |
Gene ID: Rep_40_c_31_2
Type: CAZyme
Location: 2878 - 4287 (+)
Type: CAZyme
Location: 2878 - 4287 (+)
Gene ID: Rep_40_c_31_3
Type:
Location: 4319 - 4531 (+)
Type:
Location: 4319 - 4531 (+)
Gene ID: Rep_40_c_31_4
Type: pfam
Location: 4599 - 6689 (-)
Type: pfam
Location: 4599 - 6689 (-)
Gene ID: Rep_40_c_31_5
Type: CAZyme
Location: 7186 - 8718 (+)
Type: CAZyme
Location: 7186 - 8718 (+)
Gene ID: Rep_40_c_31_6
Type: TC
Location: 9315 - 10181 (+)
Type: TC
Location: 9315 - 10181 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Opitutales
Family
CAG-312
Genus
Merdousia
Species
Merdousia sp944389175
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.