Cluster: Rep_40_CGC22
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_40
- CGC Family ID: CGCFAM_00089
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_40_c_28 | Rep_40_c_28_2 | 1790 | 3712 | + | 3.A.1.121.4 |
| pfam | Rep_40_c_28 | Rep_40_c_28_3 | 3717 | 4592 | + | Exo_endo_phos |
| pfam | Rep_40_c_28 | Rep_40_c_28_4 | 4601 | 6880 | + | S1 | Tex_N | HHH_3 | HHH_7 | Tex_YqgF | HHH_9 | Tex_central_region | S1_RRP5 |
| CAZyme | Rep_40_c_28 | Rep_40_c_28_5 | 7471 | 8880 | - | GH180 |
Gene ID: Rep_40_c_28_2
Type: TC
Location: 1790 - 3712 (+)
Type: TC
Location: 1790 - 3712 (+)
Gene ID: Rep_40_c_28_3
Type: pfam
Location: 3717 - 4592 (+)
Type: pfam
Location: 3717 - 4592 (+)
Gene ID: Rep_40_c_28_4
Type: pfam
Location: 4601 - 6880 (+)
Type: pfam
Location: 4601 - 6880 (+)
Gene ID: Rep_40_c_28_5
Type: CAZyme
Location: 7471 - 8880 (-)
Type: CAZyme
Location: 7471 - 8880 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Opitutales
Family
CAG-312
Genus
Merdousia
Species
Merdousia sp944389175
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.