Cluster: Rep_40_CGC17
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_40
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_40_c_20 | Rep_40_c_20_71 | 76748 | 77839 | - | GT28 |
| TC | Rep_40_c_20 | Rep_40_c_20_72 | 77832 | 78959 | - | 2.A.103.1.3 |
| pfam | Rep_40_c_20 | Rep_40_c_20_73 | 78978 | 80126 | - | LysM | LysM | LysM |
| pfam | Rep_40_c_20 | Rep_40_c_20_74 | 80145 | 81431 | - | Mur_ligase_C | Mur_ligase_M |
| TC | Rep_40_c_20 | Rep_40_c_20_75 | 81433 | 82530 | - | 9.B.146.1.6 |
Gene ID: Rep_40_c_20_71
Type: CAZyme
Location: 76748 - 77839 (-)
Type: CAZyme
Location: 76748 - 77839 (-)
Gene ID: Rep_40_c_20_72
Type: TC
Location: 77832 - 78959 (-)
Type: TC
Location: 77832 - 78959 (-)
Gene ID: Rep_40_c_20_73
Type: pfam
Location: 78978 - 80126 (-)
Type: pfam
Location: 78978 - 80126 (-)
Gene ID: Rep_40_c_20_74
Type: pfam
Location: 80145 - 81431 (-)
Type: pfam
Location: 80145 - 81431 (-)
Gene ID: Rep_40_c_20_75
Type: TC
Location: 81433 - 82530 (-)
Type: TC
Location: 81433 - 82530 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Opitutales
Family
CAG-312
Genus
Merdousia
Species
Merdousia sp944389175
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.