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Cluster: Rep_408_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_408_c_77 Rep_408_c_77_20 21793 23919 - 3.A.6.1.1
pfam Rep_408_c_77 Rep_408_c_77_21 24632 26071 + NusB
TC Rep_408_c_77 Rep_408_c_77_22 26129 26452 + 3.A.5.1.1
NULL(UNKNOWN) Rep_408_c_77 Rep_408_c_77_23 26485 27456 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_408_c_77 Rep_408_c_77_24 27508 28077 + CoaE
TC Rep_408_c_77 Rep_408_c_77_25 28168 28971 + 1.B.18.3.3
TC Rep_408_c_77 Rep_408_c_77_26 29006 31300 + 8.A.3.3.4
NULL(UNKNOWN) Rep_408_c_77 Rep_408_c_77_27 31313 32608 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_408_c_77 Rep_408_c_77_28 32628 33674 + GT2
STP Rep_408_c_77 Rep_408_c_77_29 33752 35563 + Aminotran_1_2
pfam Rep_408_c_77 Rep_408_c_77_30 35568 36479 + OCD_Mu_crystall
TC Rep_408_c_77 Rep_408_c_77_31 36480 37916 + 2.A.66.2.7
Gene ID: Rep_408_c_77_20
Type: TC
Location: 21793 - 23919 (-)
Gene ID: Rep_408_c_77_21
Type: pfam
Location: 24632 - 26071 (+)
Gene ID: Rep_408_c_77_22
Type: TC
Location: 26129 - 26452 (+)
Gene ID: Rep_408_c_77_23
Type:
Location: 26485 - 27456 (+)
Gene ID: Rep_408_c_77_24
Type: pfam
Location: 27508 - 28077 (+)
Gene ID: Rep_408_c_77_25
Type: TC
Location: 28168 - 28971 (+)
Gene ID: Rep_408_c_77_26
Type: TC
Location: 29006 - 31300 (+)
Gene ID: Rep_408_c_77_27
Type:
Location: 31313 - 32608 (+)
Gene ID: Rep_408_c_77_28
Type: CAZyme
Location: 32628 - 33674 (+)
Gene ID: Rep_408_c_77_29
Type: STP
Location: 33752 - 35563 (+)
Gene ID: Rep_408_c_77_30
Type: pfam
Location: 35568 - 36479 (+)
Gene ID: Rep_408_c_77_31
Type: TC
Location: 36480 - 37916 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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