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Cluster: Rep_408_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_408_c_64 Rep_408_c_64_4 2288 3475 - 2.A.1.7.17
CAZyme Rep_408_c_64 Rep_408_c_64_5 3488 5323 - GH32
TF Rep_408_c_64 Rep_408_c_64_6 5544 8288 + HTH_AraC
TC Rep_408_c_64 Rep_408_c_64_7 8477 11530 + 1.B.14.6.1
TC Rep_408_c_64 Rep_408_c_64_8 11557 13326 + 8.A.46.1.6
CAZyme Rep_408_c_64 Rep_408_c_64_9 13556 15517 - GH97
CAZyme Rep_408_c_64 Rep_408_c_64_10 15543 17012 - CE6
CAZyme Rep_408_c_64 Rep_408_c_64_11 17057 19114 - GH5_21
CAZyme Rep_408_c_64 Rep_408_c_64_12 19123 20505 - CBM6 | GH43_29
CAZyme Rep_408_c_64 Rep_408_c_64_13 20492 21667 - CE1
CAZyme Rep_408_c_64 Rep_408_c_64_14 21726 23057 - CBM6 | GH43_29
CAZyme Rep_408_c_64 Rep_408_c_64_15 23075 25501 - GH31_4
CAZyme Rep_408_c_64 Rep_408_c_64_16 25699 27012 - GH10
Gene ID: Rep_408_c_64_4
Type: TC
Location: 2288 - 3475 (-)
Gene ID: Rep_408_c_64_5
Type: CAZyme
Location: 3488 - 5323 (-)
Gene ID: Rep_408_c_64_6
Type: TF
Location: 5544 - 8288 (+)
Gene ID: Rep_408_c_64_7
Type: TC
Location: 8477 - 11530 (+)
Gene ID: Rep_408_c_64_8
Type: TC
Location: 11557 - 13326 (+)
Gene ID: Rep_408_c_64_9
Type: CAZyme
Location: 13556 - 15517 (-)
Gene ID: Rep_408_c_64_10
Type: CAZyme
Location: 15543 - 17012 (-)
Gene ID: Rep_408_c_64_11
Type: CAZyme
Location: 17057 - 19114 (-)
Gene ID: Rep_408_c_64_12
Type: CAZyme
Location: 19123 - 20505 (-)
Gene ID: Rep_408_c_64_13
Type: CAZyme
Location: 20492 - 21667 (-)
Gene ID: Rep_408_c_64_14
Type: CAZyme
Location: 21726 - 23057 (-)
Gene ID: Rep_408_c_64_15
Type: CAZyme
Location: 23075 - 25501 (-)
Gene ID: Rep_408_c_64_16
Type: CAZyme
Location: 25699 - 27012 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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