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Cluster: Rep_408_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_408_c_61 Rep_408_c_61_11 11208 11978 - 3.A.1.27.5
TC Rep_408_c_61 Rep_408_c_61_12 11975 12724 - 3.A.1.27.1
pfam Rep_408_c_61 Rep_408_c_61_13 12835 14196 - tRNA-synt_2b | HGTP_anticodon | tRNA-synt_His
pfam Rep_408_c_61 Rep_408_c_61_14 14303 15145 + AP_endonuc_2
TC Rep_408_c_61 Rep_408_c_61_15 15221 16552 + 2.A.2.6.2
CAZyme Rep_408_c_61 Rep_408_c_61_16 16708 20160 - PL1_2
NULL(UNKNOWN) Rep_408_c_61 Rep_408_c_61_17 20309 21262 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_408_c_61 Rep_408_c_61_18 21372 23438 - SusD_RagB | SusD-like_3
TC Rep_408_c_61 Rep_408_c_61_19 23458 26712 - 1.B.14.6.1
TC Rep_408_c_61 Rep_408_c_61_20 27071 28360 - 2.A.66.1.36
TC Rep_408_c_61 Rep_408_c_61_21 28374 30368 - 2.A.67.4.2
Gene ID: Rep_408_c_61_11
Type: TC
Location: 11208 - 11978 (-)
Gene ID: Rep_408_c_61_12
Type: TC
Location: 11975 - 12724 (-)
Gene ID: Rep_408_c_61_13
Type: pfam
Location: 12835 - 14196 (-)
Gene ID: Rep_408_c_61_14
Type: pfam
Location: 14303 - 15145 (+)
Gene ID: Rep_408_c_61_15
Type: TC
Location: 15221 - 16552 (+)
Gene ID: Rep_408_c_61_16
Type: CAZyme
Location: 16708 - 20160 (-)
Gene ID: Rep_408_c_61_17
Type:
Location: 20309 - 21262 (-)
Gene ID: Rep_408_c_61_18
Type: pfam
Location: 21372 - 23438 (-)
Gene ID: Rep_408_c_61_19
Type: TC
Location: 23458 - 26712 (-)
Gene ID: Rep_408_c_61_20
Type: TC
Location: 27071 - 28360 (-)
Gene ID: Rep_408_c_61_21
Type: TC
Location: 28374 - 30368 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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