Cluster: Rep_406_CGC23
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 11
- Substrate:
- Genome ID: Rep_406
- CGC Family ID: CGCFAM_00217
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_406_c_118 | Rep_406_c_118_17 | 16543 | 17592 | - | GH43_19 |
| pfam | Rep_406_c_118 | Rep_406_c_118_18 | 17605 | 18900 | - | DUF362 |
| CAZyme | Rep_406_c_118 | Rep_406_c_118_19 | 18934 | 20967 | - | GH97 |
| CAZyme | Rep_406_c_118 | Rep_406_c_118_20 | 21049 | 23025 | - | GH127 |
| CAZyme | Rep_406_c_118 | Rep_406_c_118_21 | 23043 | 25886 | - | GH43_19 | GH43_29 | GH43_34 |
| CAZyme | Rep_406_c_118 | Rep_406_c_118_22 | 25890 | 28274 | - | PL42 |
| CAZyme | Rep_406_c_118 | Rep_406_c_118_23 | 28285 | 30597 | - | GH105 | GH154 |
| CAZyme | Rep_406_c_118 | Rep_406_c_118_24 | 30629 | 31717 | - | GH43_24 |
| TF | Rep_406_c_118 | Rep_406_c_118_25 | 31770 | 35789 | - | HTH_AraC |
| NULL(UNKNOWN) | Rep_406_c_118 | Rep_406_c_118_26 | 35991 | 36143 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_406_c_118 | Rep_406_c_118_27 | 36171 | 39455 | + | 1.B.14.6.1 |
| pfam | Rep_406_c_118 | Rep_406_c_118_28 | 39479 | 41503 | + | SusD_RagB | SusD-like_3 |
| CAZyme | Rep_406_c_118 | Rep_406_c_118_29 | 41618 | 43582 | + | GH43_17 | GH43_24 |
| CAZyme | Rep_406_c_118 | Rep_406_c_118_30 | 43602 | 44468 | + | GH16_3 |
| CAZyme | Rep_406_c_118 | Rep_406_c_118_31 | 44493 | 46892 | + | GH35 |
| CAZyme | Rep_406_c_118 | Rep_406_c_118_32 | 47112 | 48908 | + | CBM50 | CBM50 | CBM50 |
Gene ID: Rep_406_c_118_17
Type: CAZyme
Location: 16543 - 17592 (-)
Type: CAZyme
Location: 16543 - 17592 (-)
Gene ID: Rep_406_c_118_18
Type: pfam
Location: 17605 - 18900 (-)
Type: pfam
Location: 17605 - 18900 (-)
Gene ID: Rep_406_c_118_19
Type: CAZyme
Location: 18934 - 20967 (-)
Type: CAZyme
Location: 18934 - 20967 (-)
Gene ID: Rep_406_c_118_20
Type: CAZyme
Location: 21049 - 23025 (-)
Type: CAZyme
Location: 21049 - 23025 (-)
Gene ID: Rep_406_c_118_21
Type: CAZyme
Location: 23043 - 25886 (-)
Type: CAZyme
Location: 23043 - 25886 (-)
Gene ID: Rep_406_c_118_22
Type: CAZyme
Location: 25890 - 28274 (-)
Type: CAZyme
Location: 25890 - 28274 (-)
Gene ID: Rep_406_c_118_23
Type: CAZyme
Location: 28285 - 30597 (-)
Type: CAZyme
Location: 28285 - 30597 (-)
Gene ID: Rep_406_c_118_24
Type: CAZyme
Location: 30629 - 31717 (-)
Type: CAZyme
Location: 30629 - 31717 (-)
Gene ID: Rep_406_c_118_25
Type: TF
Location: 31770 - 35789 (-)
Type: TF
Location: 31770 - 35789 (-)
Gene ID: Rep_406_c_118_26
Type:
Location: 35991 - 36143 (-)
Type:
Location: 35991 - 36143 (-)
Gene ID: Rep_406_c_118_27
Type: TC
Location: 36171 - 39455 (+)
Type: TC
Location: 36171 - 39455 (+)
Gene ID: Rep_406_c_118_28
Type: pfam
Location: 39479 - 41503 (+)
Type: pfam
Location: 39479 - 41503 (+)
Gene ID: Rep_406_c_118_29
Type: CAZyme
Location: 41618 - 43582 (+)
Type: CAZyme
Location: 41618 - 43582 (+)
Gene ID: Rep_406_c_118_30
Type: CAZyme
Location: 43602 - 44468 (+)
Type: CAZyme
Location: 43602 - 44468 (+)
Gene ID: Rep_406_c_118_31
Type: CAZyme
Location: 44493 - 46892 (+)
Type: CAZyme
Location: 44493 - 46892 (+)
Gene ID: Rep_406_c_118_32
Type: CAZyme
Location: 47112 - 48908 (+)
Type: CAZyme
Location: 47112 - 48908 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Duncaniella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.