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Cluster: Rep_401_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_401_c_0 Rep_401_c_0_967 1186964 1188379 + 2.A.66.1.32
pfam Rep_401_c_0 Rep_401_c_0_968 1188397 1189992 + FAD-depend_C
TC Rep_401_c_0 Rep_401_c_0_969 1190106 1192694 + 3.A.9.1.2
NULL(UNKNOWN) Rep_401_c_0 Rep_401_c_0_970 1192814 1193290 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_401_c_0 Rep_401_c_0_971 1193375 1195255 - 3.A.1.120.6
NULL(UNKNOWN) Rep_401_c_0 Rep_401_c_0_972 1195319 1195417 - NULL(UNKNOWN)
[View Structural Homologs]
TF Rep_401_c_0 Rep_401_c_0_973 1195414 1196364 - HTH_AraC | HTH_AraC
CAZyme Rep_401_c_0 Rep_401_c_0_974 1196392 1199034 - GH29
CAZyme Rep_401_c_0 Rep_401_c_0_975 1199050 1199811 - GH29
Gene ID: Rep_401_c_0_967
Type: TC
Location: 1186964 - 1188379 (+)
Gene ID: Rep_401_c_0_968
Type: pfam
Location: 1188397 - 1189992 (+)
Gene ID: Rep_401_c_0_969
Type: TC
Location: 1190106 - 1192694 (+)
Gene ID: Rep_401_c_0_970
Type:
Location: 1192814 - 1193290 (+)
Gene ID: Rep_401_c_0_971
Type: TC
Location: 1193375 - 1195255 (-)
Gene ID: Rep_401_c_0_972
Type:
Location: 1195319 - 1195417 (-)
Gene ID: Rep_401_c_0_973
Type: TF
Location: 1195414 - 1196364 (-)
Gene ID: Rep_401_c_0_974
Type: CAZyme
Location: 1196392 - 1199034 (-)
Gene ID: Rep_401_c_0_975
Type: CAZyme
Location: 1199050 - 1199811 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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