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Cluster: Rep_392_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_392_c_49 Rep_392_c_49_29 37075 40113 - 1.B.14.6.1
TF Rep_392_c_49 Rep_392_c_49_30 40346 43210 - HTH_AraC
CAZyme Rep_392_c_49 Rep_392_c_49_31 43405 45243 + GH32
TC Rep_392_c_49 Rep_392_c_49_32 45275 46465 + 2.A.1.7.17
STP Rep_392_c_49 Rep_392_c_49_33 46500 47378 + PfkB
pfam Rep_392_c_49 Rep_392_c_49_34 47701 47949 + DUF4332
TC Rep_392_c_49 Rep_392_c_49_35 48094 48906 + 1.B.18.3.3
TC Rep_392_c_49 Rep_392_c_49_36 48960 51329 + 8.A.3.3.4
Gene ID: Rep_392_c_49_29
Type: TC
Location: 37075 - 40113 (-)
Gene ID: Rep_392_c_49_30
Type: TF
Location: 40346 - 43210 (-)
Gene ID: Rep_392_c_49_31
Type: CAZyme
Location: 43405 - 45243 (+)
Gene ID: Rep_392_c_49_32
Type: TC
Location: 45275 - 46465 (+)
Gene ID: Rep_392_c_49_33
Type: STP
Location: 46500 - 47378 (+)
Gene ID: Rep_392_c_49_34
Type: pfam
Location: 47701 - 47949 (+)
Gene ID: Rep_392_c_49_35
Type: TC
Location: 48094 - 48906 (+)
Gene ID: Rep_392_c_49_36
Type: TC
Location: 48960 - 51329 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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