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Cluster: Rep_392_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_392_c_34 Rep_392_c_34_15 18350 20554 - GH36
TC Rep_392_c_34 Rep_392_c_34_16 21043 24249 + 1.B.14.6.1
pfam Rep_392_c_34 Rep_392_c_34_17 24275 25966 + SusD_RagB | SusD-like_3
pfam Rep_392_c_34 Rep_392_c_34_18 25997 27325 + SGBP_B_XBD
CAZyme Rep_392_c_34 Rep_392_c_34_19 27360 28754 + GH26
CAZyme Rep_392_c_34 Rep_392_c_34_20 28864 30003 + GH26
CAZyme Rep_392_c_34 Rep_392_c_34_21 30069 31232 + GH130_1
TC Rep_392_c_34 Rep_392_c_34_22 31335 32804 + 2.A.2.3.5
Gene ID: Rep_392_c_34_15
Type: CAZyme
Location: 18350 - 20554 (-)
Gene ID: Rep_392_c_34_16
Type: TC
Location: 21043 - 24249 (+)
Gene ID: Rep_392_c_34_17
Type: pfam
Location: 24275 - 25966 (+)
Gene ID: Rep_392_c_34_18
Type: pfam
Location: 25997 - 27325 (+)
Gene ID: Rep_392_c_34_19
Type: CAZyme
Location: 27360 - 28754 (+)
Gene ID: Rep_392_c_34_20
Type: CAZyme
Location: 28864 - 30003 (+)
Gene ID: Rep_392_c_34_21
Type: CAZyme
Location: 30069 - 31232 (+)
Gene ID: Rep_392_c_34_22
Type: TC
Location: 31335 - 32804 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_392_c_34_21 vegan > vegetarian 1.40861 0.04449

🧭 Explore Read Mapping of CGC

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