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Cluster: Rep_389_CGC37

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_389_c_117 Rep_389_c_117_4 6613 7563 + 2.A.4.7.9
NULL(UNKNOWN) Rep_389_c_117 Rep_389_c_117_5 7580 8983 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_389_c_117 Rep_389_c_117_6 9039 9695 + 3.A.1.122.3
NULL(UNKNOWN) Rep_389_c_117 Rep_389_c_117_7 9710 10885 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_389_c_117 Rep_389_c_117_8 10979 13243 + TGS | RelA_SpoT | ACT_4 | HD_4 | RelA_AH_RIS
CAZyme Rep_389_c_117 Rep_389_c_117_9 13353 15980 + CBM62
NULL(UNKNOWN) Rep_389_c_117 Rep_389_c_117_10 16107 16979 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_389_c_117 Rep_389_c_117_11 17189 18580 + NusB
TC Rep_389_c_117 Rep_389_c_117_12 18602 18931 + 3.A.5.1.1
Gene ID: Rep_389_c_117_4
Type: TC
Location: 6613 - 7563 (+)
Gene ID: Rep_389_c_117_5
Type:
Location: 7580 - 8983 (+)
Gene ID: Rep_389_c_117_6
Type: TC
Location: 9039 - 9695 (+)
Gene ID: Rep_389_c_117_7
Type:
Location: 9710 - 10885 (+)
Gene ID: Rep_389_c_117_8
Type: pfam
Location: 10979 - 13243 (+)
Gene ID: Rep_389_c_117_9
Type: CAZyme
Location: 13353 - 15980 (+)
Gene ID: Rep_389_c_117_10
Type:
Location: 16107 - 16979 (+)
Gene ID: Rep_389_c_117_11
Type: pfam
Location: 17189 - 18580 (+)
Gene ID: Rep_389_c_117_12
Type: TC
Location: 18602 - 18931 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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