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Cluster: Rep_376_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_376_c_10 Rep_376_c_10_15 15297 15923 - 9.B.18.1.2
NULL(UNKNOWN) Rep_376_c_10 Rep_376_c_10_16 15932 16588 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_376_c_10 Rep_376_c_10_17 16585 18072 - 2.A.15.1.9
CAZyme Rep_376_c_10 Rep_376_c_10_18 18208 19413 - GT4
pfam Rep_376_c_10 Rep_376_c_10_19 19435 20613 - Epimerase_2
pfam Rep_376_c_10 Rep_376_c_10_20 21060 22256 - Epimerase | Polysacc_synt_C
TC Rep_376_c_10 Rep_376_c_10_21 22726 23775 - 9.B.18.2.1
pfam Rep_376_c_10 Rep_376_c_10_22 23806 24459 - Hexapep | Hexapep_2
CAZyme Rep_376_c_10 Rep_376_c_10_23 24463 25575 - GT4
pfam Rep_376_c_10 Rep_376_c_10_24 25588 26736 - Wzy_C
TC Rep_376_c_10 Rep_376_c_10_25 26797 28260 - 2.A.66.2.23
Gene ID: Rep_376_c_10_15
Type: TC
Location: 15297 - 15923 (-)
Gene ID: Rep_376_c_10_16
Type:
Location: 15932 - 16588 (-)
Gene ID: Rep_376_c_10_17
Type: TC
Location: 16585 - 18072 (-)
Gene ID: Rep_376_c_10_18
Type: CAZyme
Location: 18208 - 19413 (-)
Gene ID: Rep_376_c_10_19
Type: pfam
Location: 19435 - 20613 (-)
Gene ID: Rep_376_c_10_20
Type: pfam
Location: 21060 - 22256 (-)
Gene ID: Rep_376_c_10_21
Type: TC
Location: 22726 - 23775 (-)
Gene ID: Rep_376_c_10_22
Type: pfam
Location: 23806 - 24459 (-)
Gene ID: Rep_376_c_10_23
Type: CAZyme
Location: 24463 - 25575 (-)
Gene ID: Rep_376_c_10_24
Type: pfam
Location: 25588 - 26736 (-)
Gene ID: Rep_376_c_10_25
Type: TC
Location: 26797 - 28260 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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