Cluster: Rep_371_CGC8
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 5
- Substrate: pectin/galactan
- Genome ID: Rep_371
- CGC Family ID: CGCFAM_00031
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_371_c_37 | Rep_371_c_37_3 | 1780 | 4194 | - | GH2 |
| CAZyme | Rep_371_c_37 | Rep_371_c_37_4 | 4231 | 5283 | - | GH53 |
| pfam | Rep_371_c_37 | Rep_371_c_37_5 | 5299 | 6972 | - | SusE | DUF5111 | DUF5114 |
| TC | Rep_371_c_37 | Rep_371_c_37_6 | 7015 | 8628 | - | 8.A.46.1.1 |
| TC | Rep_371_c_37 | Rep_371_c_37_7 | 8642 | 11611 | - | 1.B.14.6.1 |
| TF | Rep_371_c_37 | Rep_371_c_37_8 | 11793 | 15752 | - | HTH_AraC |
| TC | Rep_371_c_37 | Rep_371_c_37_9 | 15889 | 16263 | + | 2.A.7.34.3 |
| CAZyme | Rep_371_c_37 | Rep_371_c_37_10 | 16368 | 18368 | - | PL12_2 |
| CAZyme | Rep_371_c_37 | Rep_371_c_37_11 | 18405 | 19691 | - | GH88 |
| TC | Rep_371_c_37 | Rep_371_c_37_12 | 19776 | 21440 | - | 8.A.46.1.3 |
| TC | Rep_371_c_37 | Rep_371_c_37_13 | 21465 | 24659 | - | 1.B.14.6.1 |
| STP | Rep_371_c_37 | Rep_371_c_37_14 | 24859 | 25317 | - | AraC_binding |
| sulfatase | Rep_371_c_37 | Rep_371_c_37_15 | 25314 | 26483 | - | S1_4 |
| CAZyme | Rep_371_c_37 | Rep_371_c_37_16 | 26495 | 27712 | - | GH88 |
Gene ID: Rep_371_c_37_3
Type: CAZyme
Location: 1780 - 4194 (-)
Type: CAZyme
Location: 1780 - 4194 (-)
Gene ID: Rep_371_c_37_4
Type: CAZyme
Location: 4231 - 5283 (-)
Type: CAZyme
Location: 4231 - 5283 (-)
Gene ID: Rep_371_c_37_5
Type: pfam
Location: 5299 - 6972 (-)
Type: pfam
Location: 5299 - 6972 (-)
Gene ID: Rep_371_c_37_6
Type: TC
Location: 7015 - 8628 (-)
Type: TC
Location: 7015 - 8628 (-)
Gene ID: Rep_371_c_37_7
Type: TC
Location: 8642 - 11611 (-)
Type: TC
Location: 8642 - 11611 (-)
Gene ID: Rep_371_c_37_8
Type: TF
Location: 11793 - 15752 (-)
Type: TF
Location: 11793 - 15752 (-)
Gene ID: Rep_371_c_37_9
Type: TC
Location: 15889 - 16263 (+)
Type: TC
Location: 15889 - 16263 (+)
Gene ID: Rep_371_c_37_10
Type: CAZyme
Location: 16368 - 18368 (-)
Type: CAZyme
Location: 16368 - 18368 (-)
Gene ID: Rep_371_c_37_11
Type: CAZyme
Location: 18405 - 19691 (-)
Type: CAZyme
Location: 18405 - 19691 (-)
Gene ID: Rep_371_c_37_12
Type: TC
Location: 19776 - 21440 (-)
Type: TC
Location: 19776 - 21440 (-)
Gene ID: Rep_371_c_37_13
Type: TC
Location: 21465 - 24659 (-)
Type: TC
Location: 21465 - 24659 (-)
Gene ID: Rep_371_c_37_14
Type: STP
Location: 24859 - 25317 (-)
Type: STP
Location: 24859 - 25317 (-)
Gene ID: Rep_371_c_37_15
Type: sulfatase
Location: 25314 - 26483 (-)
Type: sulfatase
Location: 25314 - 26483 (-)
Gene ID: Rep_371_c_37_16
Type: CAZyme
Location: 26495 - 27712 (-)
Type: CAZyme
Location: 26495 - 27712 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
CAG-873
Species
CAG-873 sp900759825
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.