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Cluster: Rep_371_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_371_c_27 Rep_371_c_27_3 1230 2600 - 2.A.1.3.17
NULL(UNKNOWN) Rep_371_c_27 Rep_371_c_27_4 2826 2957 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_371_c_27 Rep_371_c_27_5 3009 5024 - GH51_2
CAZyme Rep_371_c_27 Rep_371_c_27_6 5036 7405 - GH3
CAZyme Rep_371_c_27 Rep_371_c_27_7 7417 9678 - GH3
NULL(UNKNOWN) Rep_371_c_27 Rep_371_c_27_8 9831 10775 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_371_c_27 Rep_371_c_27_9 10908 11816 - SusD-like | SusD-like | SusD-like_2
TC Rep_371_c_27 Rep_371_c_27_10 11813 12646 - 8.A.46.2.2
TC Rep_371_c_27 Rep_371_c_27_11 12663 15638 - 1.B.14.6.13
CAZyme Rep_371_c_27 Rep_371_c_27_12 15873 17069 - GH5_4
CAZyme Rep_371_c_27 Rep_371_c_27_13 17360 18496 - GH5_38
Gene ID: Rep_371_c_27_3
Type: TC
Location: 1230 - 2600 (-)
Gene ID: Rep_371_c_27_4
Type:
Location: 2826 - 2957 (-)
Gene ID: Rep_371_c_27_5
Type: CAZyme
Location: 3009 - 5024 (-)
Gene ID: Rep_371_c_27_6
Type: CAZyme
Location: 5036 - 7405 (-)
Gene ID: Rep_371_c_27_7
Type: CAZyme
Location: 7417 - 9678 (-)
Gene ID: Rep_371_c_27_8
Type:
Location: 9831 - 10775 (-)
Gene ID: Rep_371_c_27_9
Type: pfam
Location: 10908 - 11816 (-)
Gene ID: Rep_371_c_27_10
Type: TC
Location: 11813 - 12646 (-)
Gene ID: Rep_371_c_27_11
Type: TC
Location: 12663 - 15638 (-)
Gene ID: Rep_371_c_27_12
Type: CAZyme
Location: 15873 - 17069 (-)
Gene ID: Rep_371_c_27_13
Type: CAZyme
Location: 17360 - 18496 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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