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Cluster: Rep_371_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_371_c_16 Rep_371_c_16_7 12991 14211 - 3.A.1.125.1
TF Rep_371_c_16 Rep_371_c_16_8 14270 16264 - HTH_AraC
STP Rep_371_c_16 Rep_371_c_16_9 16285 18264 - Reg_prop
TC Rep_371_c_16 Rep_371_c_16_10 18568 21873 + 1.B.14.6.1
pfam Rep_371_c_16 Rep_371_c_16_11 21900 24008 + SusD_RagB | SusD-like_3
NULL(UNKNOWN) Rep_371_c_16 Rep_371_c_16_12 24092 24916 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_371_c_16 Rep_371_c_16_13 25002 27551 + GH16_3
TC Rep_371_c_16 Rep_371_c_16_14 27706 28365 - 1.A.62.2.1
Gene ID: Rep_371_c_16_7
Type: TC
Location: 12991 - 14211 (-)
Gene ID: Rep_371_c_16_8
Type: TF
Location: 14270 - 16264 (-)
Gene ID: Rep_371_c_16_9
Type: STP
Location: 16285 - 18264 (-)
Gene ID: Rep_371_c_16_10
Type: TC
Location: 18568 - 21873 (+)
Gene ID: Rep_371_c_16_11
Type: pfam
Location: 21900 - 24008 (+)
Gene ID: Rep_371_c_16_12
Type:
Location: 24092 - 24916 (+)
Gene ID: Rep_371_c_16_13
Type: CAZyme
Location: 25002 - 27551 (+)
Gene ID: Rep_371_c_16_14
Type: TC
Location: 27706 - 28365 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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