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Cluster: Rep_357_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_357_c_48 Rep_357_c_48_5 2841 3899 + GT4
TF Rep_357_c_48 Rep_357_c_48_6 3862 7767 - HTH_AraC
CAZyme Rep_357_c_48 Rep_357_c_48_7 7967 10465 + GH147
TC Rep_357_c_48 Rep_357_c_48_8 10552 13536 + 1.B.14.6.1
TC Rep_357_c_48 Rep_357_c_48_9 13550 15121 + 8.A.46.1.1
pfam Rep_357_c_48 Rep_357_c_48_10 15125 16831 + SusE | DUF5111 | DUF5114
CAZyme Rep_357_c_48 Rep_357_c_48_11 16886 17947 + GH53
CAZyme Rep_357_c_48 Rep_357_c_48_12 18007 20442 + GH2
Gene ID: Rep_357_c_48_5
Type: CAZyme
Location: 2841 - 3899 (+)
Gene ID: Rep_357_c_48_6
Type: TF
Location: 3862 - 7767 (-)
Gene ID: Rep_357_c_48_7
Type: CAZyme
Location: 7967 - 10465 (+)
Gene ID: Rep_357_c_48_8
Type: TC
Location: 10552 - 13536 (+)
Gene ID: Rep_357_c_48_9
Type: TC
Location: 13550 - 15121 (+)
Gene ID: Rep_357_c_48_10
Type: pfam
Location: 15125 - 16831 (+)
Gene ID: Rep_357_c_48_11
Type: CAZyme
Location: 16886 - 17947 (+)
Gene ID: Rep_357_c_48_12
Type: CAZyme
Location: 18007 - 20442 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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