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Cluster: Rep_357_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_357_c_28 Rep_357_c_28_18 18510 19862 - 3.A.5.1.1
pfam Rep_357_c_28 Rep_357_c_28_19 19868 20215 - Asp_decarbox
pfam Rep_357_c_28 Rep_357_c_28_20 20221 21141 - Pantoate_ligase
CAZyme Rep_357_c_28 Rep_357_c_28_21 21145 22134 - GH43_31
pfam Rep_357_c_28 Rep_357_c_28_22 22263 23261 + PorP_SprF
TC Rep_357_c_28 Rep_357_c_28_23 23285 24727 + 9.A.25.1.1
TC Rep_357_c_28 Rep_357_c_28_24 24740 25690 + 9.A.25.1.1
TC Rep_357_c_28 Rep_357_c_28_25 25701 27266 + 9.A.25.1.1
pfam Rep_357_c_28 Rep_357_c_28_26 27270 28394 + GldN
TC Rep_357_c_28 Rep_357_c_28_27 28482 29633 + 2.A.1.2.14
Gene ID: Rep_357_c_28_18
Type: TC
Location: 18510 - 19862 (-)
Gene ID: Rep_357_c_28_19
Type: pfam
Location: 19868 - 20215 (-)
Gene ID: Rep_357_c_28_20
Type: pfam
Location: 20221 - 21141 (-)
Gene ID: Rep_357_c_28_21
Type: CAZyme
Location: 21145 - 22134 (-)
Gene ID: Rep_357_c_28_22
Type: pfam
Location: 22263 - 23261 (+)
Gene ID: Rep_357_c_28_23
Type: TC
Location: 23285 - 24727 (+)
Gene ID: Rep_357_c_28_24
Type: TC
Location: 24740 - 25690 (+)
Gene ID: Rep_357_c_28_25
Type: TC
Location: 25701 - 27266 (+)
Gene ID: Rep_357_c_28_26
Type: pfam
Location: 27270 - 28394 (+)
Gene ID: Rep_357_c_28_27
Type: TC
Location: 28482 - 29633 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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