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Cluster: Rep_3577_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3577_c_1 Rep_3577_c_1_60 59112 60002 + 3.A.1.1.34
TC Rep_3577_c_1 Rep_3577_c_1_61 60027 60917 + 3.A.1.1.39
pfam Rep_3577_c_1 Rep_3577_c_1_62 60929 62989 + Yip1
pfam Rep_3577_c_1 Rep_3577_c_1_63 62976 65207 + DUF5696
TC Rep_3577_c_1 Rep_3577_c_1_64 65228 66103 + 3.A.1.1.20
TC Rep_3577_c_1 Rep_3577_c_1_65 66127 67026 + 3.A.1.1.27
CAZyme Rep_3577_c_1 Rep_3577_c_1_66 67046 69343 + GH31_3
CAZyme Rep_3577_c_1 Rep_3577_c_1_67 69337 72450 + GH31_3
Gene ID: Rep_3577_c_1_60
Type: TC
Location: 59112 - 60002 (+)
Gene ID: Rep_3577_c_1_61
Type: TC
Location: 60027 - 60917 (+)
Gene ID: Rep_3577_c_1_62
Type: pfam
Location: 60929 - 62989 (+)
Gene ID: Rep_3577_c_1_63
Type: pfam
Location: 62976 - 65207 (+)
Gene ID: Rep_3577_c_1_64
Type: TC
Location: 65228 - 66103 (+)
Gene ID: Rep_3577_c_1_65
Type: TC
Location: 66127 - 67026 (+)
Gene ID: Rep_3577_c_1_66
Type: CAZyme
Location: 67046 - 69343 (+)
Gene ID: Rep_3577_c_1_67
Type: CAZyme
Location: 69337 - 72450 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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