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Cluster: Rep_3577_CGC31

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3577_c_58 Rep_3577_c_58_10 8192 8920 - 3.A.1.105.12
STP Rep_3577_c_58 Rep_3577_c_58_11 8923 9492 - TetR_N
CAZyme Rep_3577_c_58 Rep_3577_c_58_12 9689 11866 - GH36
STP Rep_3577_c_58 Rep_3577_c_58_13 11953 12501 - NUDIX
peptidase Rep_3577_c_58 Rep_3577_c_58_14 12542 13447 + M14.UNC
TC Rep_3577_c_58 Rep_3577_c_58_15 13489 14904 - 3.B.1.1.6
TC Rep_3577_c_58 Rep_3577_c_58_16 14920 15792 - 3.B.1.1.2
Gene ID: Rep_3577_c_58_10
Type: TC
Location: 8192 - 8920 (-)
Gene ID: Rep_3577_c_58_11
Type: STP
Location: 8923 - 9492 (-)
Gene ID: Rep_3577_c_58_12
Type: CAZyme
Location: 9689 - 11866 (-)
Gene ID: Rep_3577_c_58_13
Type: STP
Location: 11953 - 12501 (-)
Gene ID: Rep_3577_c_58_14
Type: peptidase
Location: 12542 - 13447 (+)
Gene ID: Rep_3577_c_58_15
Type: TC
Location: 13489 - 14904 (-)
Gene ID: Rep_3577_c_58_16
Type: TC
Location: 14920 - 15792 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3577_c_58_12 vegetarian > omnivore 1.71085 0.04047
Rep_3577_c_58_13 vegetarian > vegan 2.43669 0.00207
Rep_3577_c_58_14 vegetarian > vegan 2.52797 0.00207
Rep_3577_c_58_15 vegetarian > vegan 1.68817 0.00207
Rep_3577_c_58_16 vegetarian > vegan 1.66534 0.00207

🧭 Explore Read Mapping of CGC

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