Cluster: Rep_3577_CGC28
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_3577
- CGC Family ID: CGCFAM_06721
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3577_c_39 | Rep_3577_c_39_3 | 4222 | 5067 | + | 3.A.1.1.45 |
| TC | Rep_3577_c_39 | Rep_3577_c_39_4 | 5067 | 5999 | + | 3.A.1.1.32 |
| CAZyme | Rep_3577_c_39 | Rep_3577_c_39_5 | 5971 | 8286 | + | GH31 |
| CAZyme | Rep_3577_c_39 | Rep_3577_c_39_6 | 8302 | 11361 | + | CBM32 | GH31_3 |
| pfam | Rep_3577_c_39 | Rep_3577_c_39_7 | 11383 | 12012 | + | Lipase_GDSL | Lipase_GDSL_2 |
| pfam | Rep_3577_c_39 | Rep_3577_c_39_8 | 12002 | 13093 | + | Lipase_GDSL_2 |
| CAZyme | Rep_3577_c_39 | Rep_3577_c_39_9 | 13145 | 14779 | + | GH3 |
| CAZyme | Rep_3577_c_39 | Rep_3577_c_39_10 | 14813 | 16753 | + | GH151 |
| CAZyme | Rep_3577_c_39 | Rep_3577_c_39_11 | 16772 | 19069 | + | GH38 |
Gene ID: Rep_3577_c_39_3
Type: TC
Location: 4222 - 5067 (+)
Type: TC
Location: 4222 - 5067 (+)
Gene ID: Rep_3577_c_39_4
Type: TC
Location: 5067 - 5999 (+)
Type: TC
Location: 5067 - 5999 (+)
Gene ID: Rep_3577_c_39_5
Type: CAZyme
Location: 5971 - 8286 (+)
Type: CAZyme
Location: 5971 - 8286 (+)
Gene ID: Rep_3577_c_39_6
Type: CAZyme
Location: 8302 - 11361 (+)
Type: CAZyme
Location: 8302 - 11361 (+)
Gene ID: Rep_3577_c_39_7
Type: pfam
Location: 11383 - 12012 (+)
Type: pfam
Location: 11383 - 12012 (+)
Gene ID: Rep_3577_c_39_8
Type: pfam
Location: 12002 - 13093 (+)
Type: pfam
Location: 12002 - 13093 (+)
Gene ID: Rep_3577_c_39_9
Type: CAZyme
Location: 13145 - 14779 (+)
Type: CAZyme
Location: 13145 - 14779 (+)
Gene ID: Rep_3577_c_39_10
Type: CAZyme
Location: 14813 - 16753 (+)
Type: CAZyme
Location: 14813 - 16753 (+)
Gene ID: Rep_3577_c_39_11
Type: CAZyme
Location: 16772 - 19069 (+)
Type: CAZyme
Location: 16772 - 19069 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
UBA737
Species
UBA737 sp900547305
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3577_c_39_3 | vegetarian > vegan | 2.14956 | 0.00207 |
| Rep_3577_c_39_4 | vegetarian > vegan | 2.30529 | 0.00207 |
| Rep_3577_c_39_5 | vegetarian > vegan | 1.57836 | 0.00207 |
| Rep_3577_c_39_6 | vegetarian > vegan | 1.21958 | 0.00207 |
| Rep_3577_c_39_7 | vegetarian > vegan | 3.16914 | 0.00207 |
| Rep_3577_c_39_8 | vegetarian > vegan | 3.68441 | 0.00207 |
| Rep_3577_c_39_10 | vegetarian > vegan | 1.21295 | 0.00207 |
| Rep_3577_c_39_11 | vegetarian > vegan | 1.87498 | 0.00207 |