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Cluster: Rep_3577_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3577_c_22 Rep_3577_c_22_4 4267 5178 + 3.A.1.1.20
TC Rep_3577_c_22 Rep_3577_c_22_5 5218 6078 + 3.A.1.1.39
pfam Rep_3577_c_22 Rep_3577_c_22_6 6075 8186 + NHL | NHL | Yip1
pfam Rep_3577_c_22 Rep_3577_c_22_7 8264 10819 + DUF5696
TC Rep_3577_c_22 Rep_3577_c_22_8 10816 11715 + 3.A.1.1.25
TC Rep_3577_c_22 Rep_3577_c_22_9 11753 12691 + 3.A.1.1.11
pfam Rep_3577_c_22 Rep_3577_c_22_10 12711 17864 + Flg_new | Flg_new | Flg_new | Flg_new | Flg_new | Flg_new
CAZyme Rep_3577_c_22 Rep_3577_c_22_11 17864 19111 + GH5_25
CAZyme Rep_3577_c_22 Rep_3577_c_22_12 19159 23577 + GH5_25
CAZyme Rep_3577_c_22 Rep_3577_c_22_13 23604 25274 + GH123
Gene ID: Rep_3577_c_22_4
Type: TC
Location: 4267 - 5178 (+)
Gene ID: Rep_3577_c_22_5
Type: TC
Location: 5218 - 6078 (+)
Gene ID: Rep_3577_c_22_6
Type: pfam
Location: 6075 - 8186 (+)
Gene ID: Rep_3577_c_22_7
Type: pfam
Location: 8264 - 10819 (+)
Gene ID: Rep_3577_c_22_8
Type: TC
Location: 10816 - 11715 (+)
Gene ID: Rep_3577_c_22_9
Type: TC
Location: 11753 - 12691 (+)
Gene ID: Rep_3577_c_22_10
Type: pfam
Location: 12711 - 17864 (+)
Gene ID: Rep_3577_c_22_11
Type: CAZyme
Location: 17864 - 19111 (+)
Gene ID: Rep_3577_c_22_12
Type: CAZyme
Location: 19159 - 23577 (+)
Gene ID: Rep_3577_c_22_13
Type: CAZyme
Location: 23604 - 25274 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3577_c_22_9 vegetarian > vegan 1.56919 0.00207

🧭 Explore Read Mapping of CGC

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