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Cluster: Rep_3577_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3577_c_0 Rep_3577_c_0_49 50343 51380 - GH177
pfam Rep_3577_c_0 Rep_3577_c_0_50 51758 54265 + Dockerin_1 | DUF4886
TF Rep_3577_c_0 Rep_3577_c_0_51 54354 55214 - HTH_AraC
CAZyme Rep_3577_c_0 Rep_3577_c_0_52 55554 56720 + GH130_1
CAZyme Rep_3577_c_0 Rep_3577_c_0_53 56720 57793 + GH5_40
STP Rep_3577_c_0 Rep_3577_c_0_54 57822 60704 + SBP_bac_1
pfam Rep_3577_c_0 Rep_3577_c_0_55 60661 61638 + BPD_transp_1
TC Rep_3577_c_0 Rep_3577_c_0_56 61660 62538 + 3.A.1.1.39
CAZyme Rep_3577_c_0 Rep_3577_c_0_57 62550 64532 + GH5
pfam Rep_3577_c_0 Rep_3577_c_0_58 64568 66643 + Yip1
pfam Rep_3577_c_0 Rep_3577_c_0_59 66663 68834 + DUF5696
TC Rep_3577_c_0 Rep_3577_c_0_60 68838 69752 + 3.A.1.1.11
TC Rep_3577_c_0 Rep_3577_c_0_61 69749 70717 + 3.A.1.1.11
STP Rep_3577_c_0 Rep_3577_c_0_62 70741 72057 + SBP_bac_1
pfam Rep_3577_c_0 Rep_3577_c_0_63 72090 76481 + DUF4886
CAZyme Rep_3577_c_0 Rep_3577_c_0_64 76542 77606 + CE2
CAZyme Rep_3577_c_0 Rep_3577_c_0_65 77603 78820 + GH140
Gene ID: Rep_3577_c_0_49
Type: CAZyme
Location: 50343 - 51380 (-)
Gene ID: Rep_3577_c_0_50
Type: pfam
Location: 51758 - 54265 (+)
Gene ID: Rep_3577_c_0_51
Type: TF
Location: 54354 - 55214 (-)
Gene ID: Rep_3577_c_0_52
Type: CAZyme
Location: 55554 - 56720 (+)
Gene ID: Rep_3577_c_0_53
Type: CAZyme
Location: 56720 - 57793 (+)
Gene ID: Rep_3577_c_0_54
Type: STP
Location: 57822 - 60704 (+)
Gene ID: Rep_3577_c_0_55
Type: pfam
Location: 60661 - 61638 (+)
Gene ID: Rep_3577_c_0_56
Type: TC
Location: 61660 - 62538 (+)
Gene ID: Rep_3577_c_0_57
Type: CAZyme
Location: 62550 - 64532 (+)
Gene ID: Rep_3577_c_0_58
Type: pfam
Location: 64568 - 66643 (+)
Gene ID: Rep_3577_c_0_59
Type: pfam
Location: 66663 - 68834 (+)
Gene ID: Rep_3577_c_0_60
Type: TC
Location: 68838 - 69752 (+)
Gene ID: Rep_3577_c_0_61
Type: TC
Location: 69749 - 70717 (+)
Gene ID: Rep_3577_c_0_62
Type: STP
Location: 70741 - 72057 (+)
Gene ID: Rep_3577_c_0_63
Type: pfam
Location: 72090 - 76481 (+)
Gene ID: Rep_3577_c_0_64
Type: CAZyme
Location: 76542 - 77606 (+)
Gene ID: Rep_3577_c_0_65
Type: CAZyme
Location: 77603 - 78820 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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