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Cluster: Rep_3577_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3577_c_6 Rep_3577_c_6_1 3 329 + 3.A.1.1.36
TC Rep_3577_c_6 Rep_3577_c_6_2 342 1265 + 3.A.1.1.20
pfam Rep_3577_c_6 Rep_3577_c_6_3 1284 3392 + NHL | Yip1
pfam Rep_3577_c_6 Rep_3577_c_6_4 3405 5609 + DUF5696
TC Rep_3577_c_6 Rep_3577_c_6_5 5606 6502 + 3.A.1.1.25
TC Rep_3577_c_6 Rep_3577_c_6_6 6518 7462 + 3.A.1.1.11
CAZyme Rep_3577_c_6 Rep_3577_c_6_7 7495 9648 + GH35
CAZyme Rep_3577_c_6 Rep_3577_c_6_8 10041 11057 + GH30_1
CAZyme Rep_3577_c_6 Rep_3577_c_6_9 11354 13696 + GH2
NULL(UNKNOWN) Rep_3577_c_6 Rep_3577_c_6_10 13752 13904 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_3577_c_6 Rep_3577_c_6_11 14128 15819 + GH110
TF Rep_3577_c_6 Rep_3577_c_6_12 15861 16694 - HTH_AraC | HTH_AraC
CAZyme Rep_3577_c_6 Rep_3577_c_6_13 16977 18482 + GH16_3
STP Rep_3577_c_6 Rep_3577_c_6_14 18522 21281 + SBP_bac_1
pfam Rep_3577_c_6 Rep_3577_c_6_15 21314 22228 + BPD_transp_1
TC Rep_3577_c_6 Rep_3577_c_6_16 22240 23139 + 3.A.1.1.36
pfam Rep_3577_c_6 Rep_3577_c_6_17 23158 25257 + Yip1
pfam Rep_3577_c_6 Rep_3577_c_6_18 25270 27510 + DUF5696
TC Rep_3577_c_6 Rep_3577_c_6_19 27507 28409 + 3.A.1.1.20
TC Rep_3577_c_6 Rep_3577_c_6_20 28434 29426 + 3.A.1.1.11
STP Rep_3577_c_6 Rep_3577_c_6_21 29431 30927 + SBP_bac_1
NULL(UNKNOWN) Rep_3577_c_6 Rep_3577_c_6_22 30957 33086 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_3577_c_6 Rep_3577_c_6_23 33176 33931 + GH16
Gene ID: Rep_3577_c_6_1
Type: TC
Location: 3 - 329 (+)
Gene ID: Rep_3577_c_6_2
Type: TC
Location: 342 - 1265 (+)
Gene ID: Rep_3577_c_6_3
Type: pfam
Location: 1284 - 3392 (+)
Gene ID: Rep_3577_c_6_4
Type: pfam
Location: 3405 - 5609 (+)
Gene ID: Rep_3577_c_6_5
Type: TC
Location: 5606 - 6502 (+)
Gene ID: Rep_3577_c_6_6
Type: TC
Location: 6518 - 7462 (+)
Gene ID: Rep_3577_c_6_7
Type: CAZyme
Location: 7495 - 9648 (+)
Gene ID: Rep_3577_c_6_8
Type: CAZyme
Location: 10041 - 11057 (+)
Gene ID: Rep_3577_c_6_9
Type: CAZyme
Location: 11354 - 13696 (+)
Gene ID: Rep_3577_c_6_10
Type:
Location: 13752 - 13904 (+)
Gene ID: Rep_3577_c_6_11
Type: CAZyme
Location: 14128 - 15819 (+)
Gene ID: Rep_3577_c_6_12
Type: TF
Location: 15861 - 16694 (-)
Gene ID: Rep_3577_c_6_13
Type: CAZyme
Location: 16977 - 18482 (+)
Gene ID: Rep_3577_c_6_14
Type: STP
Location: 18522 - 21281 (+)
Gene ID: Rep_3577_c_6_15
Type: pfam
Location: 21314 - 22228 (+)
Gene ID: Rep_3577_c_6_16
Type: TC
Location: 22240 - 23139 (+)
Gene ID: Rep_3577_c_6_17
Type: pfam
Location: 23158 - 25257 (+)
Gene ID: Rep_3577_c_6_18
Type: pfam
Location: 25270 - 27510 (+)
Gene ID: Rep_3577_c_6_19
Type: TC
Location: 27507 - 28409 (+)
Gene ID: Rep_3577_c_6_20
Type: TC
Location: 28434 - 29426 (+)
Gene ID: Rep_3577_c_6_21
Type: STP
Location: 29431 - 30927 (+)
Gene ID: Rep_3577_c_6_22
Type:
Location: 30957 - 33086 (+)
Gene ID: Rep_3577_c_6_23
Type: CAZyme
Location: 33176 - 33931 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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